LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre10g01100	ATGGAGAAGTATCTTCCACATGTTTTAAGTGCTTATGAAGCTATAGAAGCTGAGCGAAGGACTCTCAAGATACATTCAGGTCGAGGTGGTTGGAGACAAAGTAATTTTAATCATCCAGCTTCATTTGATTCACTTGCTTTGGATCCTGATCTAAGGAAAACTATAACAGATGATTTAGATAGATTTTTGAGGAGGAAAAATATCTACAAGAAAGTTGGTAAACCTTGGAAACGTGGATATCTTTTGTATGGTCCACCAGGAACAGGAAAATCTAGTCTTATTGTTGCTATAGCAAAATATTTGAAATTTGATGTCTATGATTTAGATTTAAGTTCTGTGTTTTCTAACTCAGAACTCACTGCAACGTTGAGAAATACATCTAACCGATCCATCATCGTAATTGAAGACATTGACTGCAACAAAGAGGTGCTCGATCGATCAGAATCTGCTGACATGTATCCAGATATGGGGGTAAAGATAGCTCGGGGTGGAAGACCTGGCAATGGTGGAAAGTTTACTCTATCAGGACTTCTTAACTATATGGATGGTTTGTGGGCAAGTTGCGGAGAGGAACGGATTTTTATTTTTACTACGAACCATAAAGACAAAGTCGATCCAGCATTGTTGCGTCCGGGACGTATGGACATGCATATTCACTTGTCTTATCTTAAAGCCAAGGCATTCAGAATCTTAGCTTCTAATTATTTGGACATTGAAGAACATCATGAACCTCTCTTAGAACAGGTTGATGAACTATTGGAAAAAATAGATGTGACCCCTGCATTAGTGGCAGAGCATTTGTTGAGAAGTGAAGATGCTGATGTTGCTCTCAAAACACTTGTTGAACTTCTTCAAGAAAAGGACATTTCAAGAGGGAATGAAGACTTTAGTCAACAAGTTTAG	903	0.3821	MEKYLPHVLSAYEAIEAERRTLKIHSGRGGWRQSNFNHPASFDSLALDPDLRKTITDDLDRFLRRKNIYKKVGKPWKRGYLLYGPPGTGKSSLIVAIAKYLKFDVYDLDLSSVFSNSELTATLRNTSNRSIIVIEDIDCNKEVLDRSESADMYPDMGVKIARGGRPGNGGKFTLSGLLNYMDGLWASCGEERIFIFTTNHKDKVDPALLRPGRMDMHIHLSYLKAKAFRILASNYLDIEEHHEPLLEQVDELLEKIDVTPALVAEHLLRSEDADVALKTLVELLQEKDISRGNEDFSQQV	300

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre10g01100	300	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	15	273	IPR027417	-
	Trre10g01100	300	SMART	AAA_5	76	224	IPR003593	GO:0016887
	Trre10g01100	300	Gene3D	-	219	291	-	-
	Trre10g01100	300	PANTHER	BCS1 AAA-TYPE ATPASE	2	288	-	-
	Trre10g01100	300	Pfam	ATPase family associated with various cellular activities (AAA)	81	221	IPR003959	GO:0005524\|GO:0016887
	Trre10g01100	300	Gene3D	-	33	218	IPR027417	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre10g01100	Trre-Chr10	8845499	8846651	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre10g01100	78	220	Calmodulin-binding Proteins	AT3G56690	29.139	7.00e-11	61.2

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre10g01100	-		K08900	gmx:100789094	375.941