Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g01098 ATGAGAACCCCACCGATCAACAATTTTTCTTCCTTGTTTTCAACAAACATTGGTTCACCATCATCATGGTTCACAATATATGCTTCCATATCCTCCTTTATAATGATTTTAAGAACTGCAATCAATGATCTCGTACCCTTAAGTCTAAGAACTTTCATCATCTCAAAGCTACAATCTTTCTTCACAAATTACCAACCCAACAATAATCAAGTCTCACTTCAAATCGACCAACTTTGGGATGGATATACCAACAATATTCTTTACATTGCAGCCAAAGTGTATCTTCCTACTAAAATATCCAAAACTTACAAATCCCTCAAAGTCGGAAAATTATCCTATCATCACAACCTTCAAGTAGCTTTTGATGGTAAGCAAGCAGTGATGGATGAATTTGATGGTATCAAGATTAAATGGACGTTTATTGAAAAAACGTCCGACAATCGTCCTTTAGAAAATCGCGATGATTTGGAACTATATGGTGTACAGGGAATACCTGGTCGTGGAATGTATAATAATAATCCAAAAGGTAATGGGAAGAATGGATTTGTATTAAGTTTTGATGAGAAGCATAGAGATAAAGTAATGGACAAGTATCTTCCACATGTTTTAAGTGCTTATGAAGCTATAGAAGCTGAGCGTAGGAGTCTAAAGATCCATTCAAGTCAAGGTGGTTGGAGACAAAGTAATTTTAATCATCCAGCTTCATTTGATTCACTTGCTTTGGATCCTGATCTAAGGAAAACTATAACAGATGATTTAGATAGATTTTTGAGAAGGAAAAGCATCTACAAGAAAGTTGGGAAACCTTGGAAACGTGGATATCTTTTGTATGGTCCACCAGGAACAGGAAAATCTAGTCTTATTGTTGCTATAGCAAAATATTTGAAATTTGATGTCTATGATTTGGATTTAAGTTCTGTGTTGTCTAACACAAATCTCACTACAATGTTGAGAAATACATCTAACCGATCCGTCATCGTCATTGAAGACATTGATTGCAACAAAGAGGTGCTCGATCGATCAGAATCTGCTGACATGTATCCAGATATGGGGGTAAAGATGGCTAGGGGTGGAAGACCTGGCAATGGTGAAAAGTTTACTCTATCAGGACTTCTCAACTATATGGATGGTTTGTGGGCAAGTTGCGGAGAGGAACGAATTTTTATATTTACTACGAATCATAAAGACAAAGTTGATCCAGCATTGTTGCGTCCGGGACGTATGGACATGCATATTCACTTGTCTTATCTTAAAGCCAAGGCATTCAGAATCTTAGCTTCTAATTATTTGGACATTGAAGAACATCATGAACCTCTCTTAGAACAGGTTGATGAACTATTGGAAAAAATAGATATGACCCCTGCATTAGTGGCAGAGCATTTGTTGAGAAGTGAAGATCCTGATGTTGCTCTCAAGACACTTGTTGAACTTCTTCAAGAAAAGGACATTTCAAGAGGGAATGAAGACTATAGCCAGCATGTCTAG 1485 0.369 MRTPPINNFSSLFSTNIGSPSSWFTIYASISSFIMILRTAINDLVPLSLRTFIISKLQSFFTNYQPNNNQVSLQIDQLWDGYTNNILYIAAKVYLPTKISKTYKSLKVGKLSYHHNLQVAFDGKQAVMDEFDGIKIKWTFIEKTSDNRPLENRDDLELYGVQGIPGRGMYNNNPKGNGKNGFVLSFDEKHRDKVMDKYLPHVLSAYEAIEAERRSLKIHSSQGGWRQSNFNHPASFDSLALDPDLRKTITDDLDRFLRRKSIYKKVGKPWKRGYLLYGPPGTGKSSLIVAIAKYLKFDVYDLDLSSVLSNTNLTTMLRNTSNRSVIVIEDIDCNKEVLDRSESADMYPDMGVKMARGGRPGNGEKFTLSGLLNYMDGLWASCGEERIFIFTTNHKDKVDPALLRPGRMDMHIHLSYLKAKAFRILASNYLDIEEHHEPLLEQVDELLEKIDMTPALVAEHLLRSEDPDVALKTLVELLQEKDISRGNEDYSQHV 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g01098 494 SMART AAA_5 270 418 IPR003593 GO:0016887
Trre10g01098 494 Gene3D - 227 412 IPR027417 -
Trre10g01098 494 Pfam Domain associated at C-terminal with AAA 46 141 IPR025753 -
Trre10g01098 494 Pfam ATPase family associated with various cellular activities (AAA) 275 415 IPR003959 GO:0005524|GO:0016887
Trre10g01098 494 PANTHER BCS1 AAA-TYPE ATPASE 26 482 - -
Trre10g01098 494 Gene3D - 413 485 - -
Trre10g01098 494 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 206 465 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g01098 Trre-Chr10 8820784 8822851 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g01098 272 414 Calmodulin-binding Proteins AT3G56690 29.221 2.29e-11 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g01098 - K08900 gmx:100787726 526.168