Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g01078 ATGGAGAAGACACGACTAAATAACCTATTTCCTCTAACTCCAAGTTCAACATTCTCAACCAAGAAAGGACGGAGTGGATATGAACCATCAGACACAGAGACAGAGTGGCAAGATACTCCACGTTACGAACGAGGAGGAAGAAAGAACGTGACTTTGAGTCCCGAAGAAACAAGAGTTACGTCTGTAAGGAACAAAAGTCCTATGACTCTCCACAAGAGACGCCCTTCAAGGTTTGAATTTGAAGTCCCACCATCACCTTCGGTAATAGGTTCAGTTCTTAGCCAACCAAGAAGAAGACACCACAGCAAGTCGCCCTATAGGCCACGCATAGCACAGGATGATGGTAATAACGACGATGATGATTCTTTGTCATATATAACAGGTTTGAATTCACGGAGAAATACAAGTCCTTTGCCAAGACCTGACTTTGGAAGAACATTGTCTCCTTATAACCGAACTCATGAACAAAGAATACCTTCAAATGAAAACAGAAAAGCAAGCTCGGGACTTCTGGAAGTGGATAGAGCGGGTACAAAACCAAACTACAGGAGAGCAGTGACTGCTCCAAGATTGAGGGACCAAGAACAAACATCGCAAAACACGAGAATGCTGAAACAAAGGGAAAAATCTCCTTGCAAAACAGGTTCAGTTAGAGAAAGAGAAATCAATGAAATGATAGCACAAGTGAAGCTATCAAAAAACCCTACTGATGATTATTCATCGGCACTAGAAAGTACAGACTCAATTCAAACAGGTGATCTTTTCTTTTCTCGCGATTGTAATGCCTTGCAAGCGAAGAATTCTTCATTGCCTATAAAAGTACAACAATACGGGTATTTTAGCCCAAGACCAGTGATCACCGACATAAATTCCATTAGCAACCCCTCTGAAATTAGGGGTAACCTCAATAAGAATATGCCAAGAAACTCATCCAGTAATGTGTTGTTGTCTCGAACAACGAGGGTCACATCAATCAGAAAGGGAAGTGGAACTGGGAAGACTCATACCAATCCTAGTGTTAAAAGTGATGCTAGTGCAAAGACAACTGACAGCATGAGGAAATTCACATCCAACAGAAAAAAGAACCAGAAAGATGCATGGTTTGCTTGTATGAGAACAGGAAACTGTAAGATCTCAAGAAAATCACCTGAACGTAAGCCAATTGACGAAGCTTCATTGATTGAGAGAGCAATAATTGTGGAAAGCATTCCACAGTTCTGGGCAGATAAACATCAGCCTGCTTCACTAGATGGCTTCATTTGCAACAAACAAGAAGCTCAACTTCTCAAGGAACTGGTATCATCACAGGGATCTTGTCCTCACATTTTACTTAAAGGACCCTCTGGTTCTGAGAAAAGAGAACTAGCAATGGCTCTTCTTCGAGAAATATATGGTGATGCATGTTCTAATGACAAAAGGACTATGAAAGTATCGGTTCCAATCACATCCAGCTCTCATCACATGGAGCTCAATGTAAATTCAGAACCAAATGCTAAATATGCTTTGATGGGATTAATCAAAGAAATTAGCAATATATATGCAATTACCCCTGAAGTAAGCAATATGAATTTCAAATCAGATTATAAAGTAATAATTCTTTATGAGGTCGACAAAGCTGCAGAGAACATCCAACACTTGATCAAATGGATCATAGACCGTTATTCAGATATATGCAAATTAGTTCTCTGCTGTGAAGATGATGAAAACATAATTGCATCTGTGAAAAACCGGTTCAAAGTTATCAATGTTGATGCTCCTCAAACTCATGAAATTATTGAGGCTCTTACTCAGATAGCAAATAAAGAGGAAATTGATCTATCCATGAATTTTGCTATGAAGATTGCTACAAAATCTAAGCAGAACCTCAGGGAAGCAATCTTGGCTCTTGAAGCATGCAAAGCACACAACTATCCATTTTCTGAAGAACAGCCAATTCCTGTTGGATGGGAGAAGATTGTAATCGAAGTTTCTGTAGAGATCCTAACTGATCCATCATTTTCACGCTTACTCTCAATACGTGGGAAATTTCAAATGCTTCTCCTGGATTTTGTCCACCCCAGATTGATTCTCCTGAAACTTGTGGAGCAGCTCCTAAGAAGAACTGAGGCTGGCTTAAAAAGGGAGCTCTACTACTGGCATGCTTATTATGACAGAAAACTCCCACCAGGAACAACAGCTTTATTAAAATTAGAAGAATTTGTGGCCAAGTTCATGAGCATTTGCAGAAGAAACTCAGTCAGTAGGCAATATGTGTAG 2256 0.3985 MEKTRLNNLFPLTPSSTFSTKKGRSGYEPSDTETEWQDTPRYERGGRKNVTLSPEETRVTSVRNKSPMTLHKRRPSRFEFEVPPSPSVIGSVLSQPRRRHHSKSPYRPRIAQDDGNNDDDDSLSYITGLNSRRNTSPLPRPDFGRTLSPYNRTHEQRIPSNENRKASSGLLEVDRAGTKPNYRRAVTAPRLRDQEQTSQNTRMLKQREKSPCKTGSVREREINEMIAQVKLSKNPTDDYSSALESTDSIQTGDLFFSRDCNALQAKNSSLPIKVQQYGYFSPRPVITDINSISNPSEIRGNLNKNMPRNSSSNVLLSRTTRVTSIRKGSGTGKTHTNPSVKSDASAKTTDSMRKFTSNRKKNQKDAWFACMRTGNCKISRKSPERKPIDEASLIERAIIVESIPQFWADKHQPASLDGFICNKQEAQLLKELVSSQGSCPHILLKGPSGSEKRELAMALLREIYGDACSNDKRTMKVSVPITSSSHHMELNVNSEPNAKYALMGLIKEISNIYAITPEVSNMNFKSDYKVIILYEVDKAAENIQHLIKWIIDRYSDICKLVLCCEDDENIIASVKNRFKVINVDAPQTHEIIEALTQIANKEEIDLSMNFAMKIATKSKQNLREAILALEACKAHNYPFSEEQPIPVGWEKIVIEVSVEILTDPSFSRLLSIRGKFQMLLLDFVHPRLILLKLVEQLLRRTEAGLKRELYYWHAYYDRKLPPGTTALLKLEEFVAKFMSICRRNSVSRQYV 751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g01078 751 MobiDBLite consensus disorder prediction 322 360 - -
Trre10g01078 751 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 401 632 IPR027417 -
Trre10g01078 751 MobiDBLite consensus disorder prediction 191 215 - -
Trre10g01078 751 MobiDBLite consensus disorder prediction 149 167 - -
Trre10g01078 751 Gene3D - 405 586 IPR027417 -
Trre10g01078 751 FunFam replication factor C subunit 3 587 645 - -
Trre10g01078 751 Gene3D - 648 741 - -
Trre10g01078 751 MobiDBLite consensus disorder prediction 322 352 - -
Trre10g01078 751 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 407 730 - -
Trre10g01078 751 MobiDBLite consensus disorder prediction 1 172 - -
Trre10g01078 751 MobiDBLite consensus disorder prediction 121 137 - -
Trre10g01078 751 MobiDBLite consensus disorder prediction 8 25 - -
Trre10g01078 751 Gene3D - 588 645 - -
Trre10g01078 751 Pfam DNA polymerase III, delta subunit 423 583 - -
Trre10g01078 751 MobiDBLite consensus disorder prediction 191 205 - -
Trre10g01078 751 SUPERFAMILY post-AAA+ oligomerization domain-like 648 740 IPR008921 GO:0003677|GO:0006260
Trre10g01078 751 MobiDBLite consensus disorder prediction 26 51 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g01078 Trre-Chr10 8617026 8620667 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g01078 406 747 Core DNA Replication Machinery Family AT5G27740 37.360 9.88e-75 244
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g01078 K10756 - gmx:100795321 964.14