Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g01076 ATGGAGAAGACACGACTAAATAACCTATTTCCTCTAACTCCAAGTTCAACATTCTCAACCAAGAAAGGACGGAGTGGATATGAACCATCAGACACAGAGACAGAGTGGCAAGATACTCCACGTTACGAACGAGGAGGAAGAAAGAACGTGACTTTGAGTCCCGAAGAAACAAGAGTTACGTCTGTAAGGAACAAAAGTCCTATGACTCTCCACAAGAGACGCCCTTCAAGGTTTGAATTTGAAGTCCCACCATCACCTTCGGTAATAGGTTCAGTTCTTAGCCAACCAAGAAGAAGACACCACAGCAAGTCGCCCTATAGGCCACGCATAGCACAGGATGATGGTAATAACGACGATGATGATTCTTTGTCATATATAACAGGTTTGAATTCACGGAGAAATACAAGTCCTTTGCCAAGACCTGACTTTGGAAGAACATTGTCTCCTTATAACCGAACTCATGAACAAAGAATACCTTCAAATGAAAACAGAAAAGCAAGCTCGGGACTTCTGGAAGTGGATAGAGCGGGTACAAAACCAAACTACAGGAGAGCAGTGACTGCTCCAAGATTGAGGGACCAAGAACAAACATCGCAAAACACGAGAATGCTGAAACAAAGGGAAAAATCTCCTTGCAAAACAGGTTCAGTTAGAGAAAGAGAAATCAATGAAATGATAGCACAAGTGAAGCTATCAAAAAACCCTACTGATGATTATTCATCGGCACTAGAAAGTACAGACTCAATTCAAACAGGTGATCTTTTCTTTTCTCGCGATTGTAATGCCTTGCAAGCGAAGAATTCTTCATTGCCTATAAAAGTACAACAATACGGGTATTTTAGCCCAAGACCAGTGATCACCGACATAAATTCCATTAGCAACCCCTCTGAAATTAGGGGTAACCTCAATAAGAATATGCCAAGAAACTCATCCAGTAATGTGTTGTTGTCTCGAACAACGAGGGTCACATCAATCAGAAAGGGAAGTGGAACTGGGAAGACTCATACCAATCCTAGTGTTAAAAGTGATGCTAGTGCAAAGACAACTGACAGCATGAGGAAATTCACATCCAACAGAAAAAAGAACCAGAAAGATGCATGGTTTGCTTGTATGAGAACAGGAAACTGTAAGATCTCAAGAAAATCACCTGAACGTAAGCCAATTGACGAAGCTTCATTGATTGAGAGAGCAATAATTGTGGAAAGCATTCCACAGTTCTGGGCAGATAAACATCAGCCTGCTTCACTAGATGGCTTCATTTGCAACAAACAAGAAGCTCAACTTCTCAAGGAACTGGTATCATCACAGGGATCTTGTCCTCACATTTTACTTAAAGGACCCTCTGGTTCTGAGAAAAGAGAACTAGCAATGGCTCTTCTTCGAGAAATATATGGTGATGCATGTTCTAATCTATCACATGATTTAAGGCATTTCCCTATTCAGGACAAAAGGACTATGAAAGTATCGGTTCCAATCACATCCAGCTCTCATCACATGGAGCTCAATGTAAATTCAGAACCAAATGCTAAATATGCTTTGATGGGATTAATCAAAGAAATTAGCAATATATATGCAATTACCCCTGAAGTAAGCAATATGAATTTCAAATCAGATTATAAAGTAATAATTCTTTATGAGGTCGACAAAGCTGCAGAGAACATCCAACACTTGATCAAATGGATCATAGACCGTTATTCAGATATATGCAAATTAGTTCTCTGCTGTGAAGATGATGAAAACATAATTGCATCTGTGAAAAACCGGTTCAAAGTTATCAATGTTGATGCTCCTCAAACTCATGAAATTATTGAGGCTCTTACTCAGATAGCAAATAAAGAGGAAATTGATCTATCCATGAATTTTGCTATGAAGATTGCTACAAAATCTAAGCAGAACCTCAGGGAAGCAATCTTGGCTCTTGAAGCATGCAAAGCACACAACTATCCATTTTCTGAAGAACAGCCAATTCCTGTTGGATGGGAGAAGATTGTAATCGAAGTTTCTGTAGAGATCCTAACTGATCCATCATTTTCACGCTTACTCTCAATACGTGGGAAATTTCAAATGCTTCTCCTGGATTTTGTCCACCCCAGATTGATTCTCCTGAAACTTGTGGAGCAGCTCCTAAGAAGAACTGAGGCTGGCTTAAAAAGGGAGCTCTACTACTGGCATGCTTATTATGACAGAAAACTCCCACCAGGAACAACAGCTTTATTAAAATTAGAAGAATTTGTGGCCAAGTTCATGAGCATTTGCAGAAGAAACTCAGTCAGTAGGCAATATGTGTAG 2289 0.398 MEKTRLNNLFPLTPSSTFSTKKGRSGYEPSDTETEWQDTPRYERGGRKNVTLSPEETRVTSVRNKSPMTLHKRRPSRFEFEVPPSPSVIGSVLSQPRRRHHSKSPYRPRIAQDDGNNDDDDSLSYITGLNSRRNTSPLPRPDFGRTLSPYNRTHEQRIPSNENRKASSGLLEVDRAGTKPNYRRAVTAPRLRDQEQTSQNTRMLKQREKSPCKTGSVREREINEMIAQVKLSKNPTDDYSSALESTDSIQTGDLFFSRDCNALQAKNSSLPIKVQQYGYFSPRPVITDINSISNPSEIRGNLNKNMPRNSSSNVLLSRTTRVTSIRKGSGTGKTHTNPSVKSDASAKTTDSMRKFTSNRKKNQKDAWFACMRTGNCKISRKSPERKPIDEASLIERAIIVESIPQFWADKHQPASLDGFICNKQEAQLLKELVSSQGSCPHILLKGPSGSEKRELAMALLREIYGDACSNLSHDLRHFPIQDKRTMKVSVPITSSSHHMELNVNSEPNAKYALMGLIKEISNIYAITPEVSNMNFKSDYKVIILYEVDKAAENIQHLIKWIIDRYSDICKLVLCCEDDENIIASVKNRFKVINVDAPQTHEIIEALTQIANKEEIDLSMNFAMKIATKSKQNLREAILALEACKAHNYPFSEEQPIPVGWEKIVIEVSVEILTDPSFSRLLSIRGKFQMLLLDFVHPRLILLKLVEQLLRRTEAGLKRELYYWHAYYDRKLPPGTTALLKLEEFVAKFMSICRRNSVSRQYV 762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g01076 762 MobiDBLite consensus disorder prediction 322 360 - -
Trre10g01076 762 FunFam Replication factor C subunit 3 405 597 - -
Trre10g01076 762 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 407 741 - -
Trre10g01076 762 MobiDBLite consensus disorder prediction 149 167 - -
Trre10g01076 762 FunFam replication factor C subunit 3 598 656 - -
Trre10g01076 762 MobiDBLite consensus disorder prediction 322 352 - -
Trre10g01076 762 MobiDBLite consensus disorder prediction 191 216 - -
Trre10g01076 762 MobiDBLite consensus disorder prediction 1 172 - -
Trre10g01076 762 Gene3D - 659 752 - -
Trre10g01076 762 MobiDBLite consensus disorder prediction 121 137 - -
Trre10g01076 762 MobiDBLite consensus disorder prediction 8 25 - -
Trre10g01076 762 Gene3D - 405 597 IPR027417 -
Trre10g01076 762 Gene3D - 599 656 - -
Trre10g01076 762 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 405 650 IPR027417 -
Trre10g01076 762 MobiDBLite consensus disorder prediction 191 205 - -
Trre10g01076 762 SUPERFAMILY post-AAA+ oligomerization domain-like 659 751 IPR008921 GO:0003677|GO:0006260
Trre10g01076 762 MobiDBLite consensus disorder prediction 26 51 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g01076 Trre-Chr10 8617026 8620667 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g01076 406 758 Core DNA Replication Machinery Family AT5G27740 37.360 4.38e-76 248
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g01076 K10756 - gmx:100795321 996.112