Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g01072 ATGTCAAGACCAAACGCTGGTAATCCTGAAGTTGATATTCCACCTGAATTGCTGATAACAAACTTTGACGATCCTATCGCTGCTATTGTGCAAAGTACATATCCAAATCTTCTTTCGCAATTACAAAATGGACGCCCGGAAGAAAACAAAAACCATGATCTGCGTGCCTTTCTCGATGAACTCTCCAATGCTACACCTGAAACTAGTATCAAAGTGAGGGTAGCAAGGATGTGGGACACACTTAATCTAAACAAACAGAAGGGTTTGATCAGTACAGATATGGTACTGATTGATGAAAAGGCAAACTACATTCATGCTACAACACCAAGGTGGGATTCACCTAAGATAAAAACAAAGTTGCGAGAAGGCAAGGTATATGTCATTTCCAAATTCGAGGTCTCAAAAAATAGACAAAGGTATGCAGTGGTTGAAAGAAATTCTTTAGAGTTGCACTTACCTGGTGACGTAACAGTAATTGAGGAGGACTGTGGTGACATCGAAATACCACGCCATATTTTTGAGTTTGTTGATTTTGACAATCTGCCCAAACGTAATGGAAAAGAAGTTTATTCAGATGTGATTGGAGTTGTAACATGTGTAAATCCAATTGAAGAAAGGACAACTGTCAACGGAAAGGTTGATATGATGTCGCTTCAATTGAAAAATGGAAGGGGAGACGTATTCAAGGTCACGTTGTGGGATGAATATGTAGCGATATTTAACCAGACATTGAAGGAACAGATGTATGATGCTCCTAAACCAAATGTGGCAATCTTCACCTCCGTCACGGTTAAACAGTACCAAGGGGAGCTTTTAGCTCAATCTTCAAGGTCCACAAAAATTTATGTCAACATCGACATTCCCGAAGTTGATGACCTCATCCGATCATTCAGGGGAGATGCCAATATTGCCAATGCATCTCCGACTGTGAATTATGCAGGGATTAGTCAGGTTAACCCTTGA 963 0.4029 MSRPNAGNPEVDIPPELLITNFDDPIAAIVQSTYPNLLSQLQNGRPEENKNHDLRAFLDELSNATPETSIKVRVARMWDTLNLNKQKGLISTDMVLIDEKANYIHATTPRWDSPKIKTKLREGKVYVISKFEVSKNRQRYAVVERNSLELHLPGDVTVIEEDCGDIEIPRHIFEFVDFDNLPKRNGKEVYSDVIGVVTCVNPIEERTTVNGKVDMMSLQLKNGRGDVFKVTLWDEYVAIFNQTLKEQMYDAPKPNVAIFTSVTVKQYQGELLAQSSRSTKIYVNIDIPEVDDLIRSFRGDANIANASPTVNYAGISQVNP 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g01072 320 SUPERFAMILY Nucleic acid-binding proteins 173 301 IPR012340 -
Trre10g01072 320 Gene3D - 166 306 IPR012340 -
Trre10g01072 320 Pfam Replication protein A OB domain 188 279 IPR031657 -
Trre10g01072 320 CDD RPA1_DBD_A_like 69 145 - -
Trre10g01072 320 SUPERFAMILY Nucleic acid-binding proteins 58 145 IPR012340 -
Trre10g01072 320 CDD RPA1_DBD_B_like 192 297 - -
Trre10g01072 320 Gene3D - 57 160 IPR012340 -
Trre10g01072 320 PANTHER OS03G0429900 PROTEIN 58 302 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g01072 Trre-Chr10 8591703 8594098 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g01072 69 293 Core DNA Replication Machinery Family AT2G06510 30.303 1.37e-11 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g01072 - - mtr:120580096 320.857