Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g01060 ATGTCGTTGAGAAGCATAGTTCGGGAACTAAAGGAAATGAGGGATGGGATTGGTAATACATCAAGACGAGGTGCAGGAAGTAGGCTTTCACAGCGTCGGACAAAGTCGCATATTGTTCCTGATATCACTTTAACATCACTTGAACCTATTGAGCAGGGACAATGGGCTAATATACCATCGGAGTTGCTTCTTGATATAATTCGGAGGGTAGAAGAGACTGAGACTTCTTGGCCTGCACGTGCTGTTGTCGTTGCTTGTGCTTCTGTGTGTAAATCTTGGAGGGCTGTTACAAAAGAGATTGTCCAGACTCCCGAACAGTGTGGAAGGTTGACATTTCCTATTTCATTAAAGCAGCCGGGTCCTCGCGATTCTCCGATACAGTGCTTCATCAGGAGGGACAGAGAAACTTCTGCATATCTGTTGTACTATGGATTGGTGCCATCGGAAAATGAGACTGATAAGCTGTTATTAGTTGCGAAAAAGATAAGGAGGGCAACCGGCACAGACTTCATCATATCTTTGGTTGCAGATGATTTTTCTCGATCCAGCAATGCATATGTTGGAAAACTCAGGTCTAATTTTTTGGGTACCAAATTCACTATATATGACAGCCAACCTCCACATGGAGCTGGAATTCCACCAAAAAGTACTAGGTCTAGTAGGAGATTTCATTCTAAGCAGGTATCTCCAAGAGTTCCAGCATGTAACTATATTGTTAGCACCATTACCTATGAGCTGAATGTTCTCCGCACGAGAGGACCAAGAAGAATGAACTGCATCATGAACTCGATACCTGTCTCAGCTGTTCAGGAAGGGGGCACTGCCCCGACTCCTACATCTTTTCCTGAAATTACCGATGAGCATTTTTGTTCTGCGCTAGCACCAGCACCAAAAGGTAAAGGTCCAGTTGGAGATTTAAGCAATTCAATCCTCCCAGTCCCTGAGATGCCGGTACAGAACCAAGGCCCAGTTGAGTCTCTGGTACTTAAAAACAAGTCTCCAAGATGGCATGAGCAGTTGCAATGCTGGTGCCTAAACTTCAAAGGTCGTGTTACAGTGGCTTCGGTCAAGAACTTTCAACTTGTGGCTGCTGTTGAGCCATCTCATAATGTTTCTGCTGCGGAGCAAGAAAAGGTTATCTTGCAGTTTGGAAAGATTGGAAAAGATATATTTACTATGGATTACCGTTATCCTCTCTCTGCCTTCCAAGCCTTTGCAATATGCTTGAGCAGCTTTGATACAAAACCAGCCTGTGAATGA 1260 0.4429 MSLRSIVRELKEMRDGIGNTSRRGAGSRLSQRRTKSHIVPDITLTSLEPIEQGQWANIPSELLLDIIRRVEETETSWPARAVVVACASVCKSWRAVTKEIVQTPEQCGRLTFPISLKQPGPRDSPIQCFIRRDRETSAYLLYYGLVPSENETDKLLLVAKKIRRATGTDFIISLVADDFSRSSNAYVGKLRSNFLGTKFTIYDSQPPHGAGIPPKSTRSSRRFHSKQVSPRVPACNYIVSTITYELNVLRTRGPRRMNCIMNSIPVSAVQEGGTAPTPTSFPEITDEHFCSALAPAPKGKGPVGDLSNSILPVPEMPVQNQGPVESLVLKNKSPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAVEPSHNVSAAEQEKVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g01060 419 Gene3D Tubby Protein; Chain A 113 419 IPR025659 -
Trre10g01060 419 PANTHER TUBBY-RELATED 50 417 - -
Trre10g01060 419 MobiDBLite consensus disorder prediction 206 225 - -
Trre10g01060 419 ProSitePatterns Tub family signature 1. 347 360 IPR018066 -
Trre10g01060 419 Gene3D - 48 104 - -
Trre10g01060 419 CDD F-box_AtTLP-like 55 99 - -
Trre10g01060 419 ProSitePatterns Tub family signature 2. 404 419 IPR018066 -
Trre10g01060 419 Pfam Tub family 116 414 IPR000007 -
Trre10g01060 419 PRINTS Tubby superfamily signature 236 263 IPR000007 -
Trre10g01060 419 PRINTS Tubby superfamily signature 397 419 IPR000007 -
Trre10g01060 419 PRINTS Tubby superfamily signature 347 363 IPR000007 -
Trre10g01060 419 PRINTS Tubby superfamily signature 186 210 IPR000007 -
Trre10g01060 419 PRINTS Tubby superfamily signature 329 346 IPR000007 -
Trre10g01060 419 PRINTS Tubby superfamily signature 376 395 IPR000007 -
Trre10g01060 419 PRINTS Tubby superfamily signature 170 186 IPR000007 -
Trre10g01060 419 SUPERFAMILY Tubby C-terminal domain-like 104 419 IPR025659 -
Trre10g01060 419 SUPERFAMILY F-box domain 50 99 IPR036047 GO:0005515
Trre10g01060 419 Pfam F-box domain 55 102 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g01060 Trre-Chr10 8527282 8529482 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g01060 1 419 TUB Transcription Factor Family AT2G18280 62.530 0.0 510
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Trre10g01060 Tub 3.3e-106 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g01060 K19600 - gmx:100778290 695.271