Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g01059 ATGAGAACAATTAGTGGTGAAAAAGTGGAGACTTTACTAAATATCCGCTCCTTTCAGGCACATAGTAAAATATGCATAGAACTGATGAATATAGTGGAAAGCATCATGAGGATACTTCCAGACATAGAGGCAGCAAGGCCAAGATGCTCATCAGGAATAGAGTCTCTATGTTTGCTGCACAACTCAATTGAGAAAGCCAGATTAGTTCTGCAACATTGTTCTGAATGCAGCAAACTCTACCTGGCTGTGACAGGGGATACAGTACTTACAAGATGCCTAAAGGCAAAAAAGTCATTAGAACAAAGCTTAATTCCCATTCAGGGTATGGTTCCAGTTCTGTTGGCTGTAGAGGTTTCTAGAATAATTGATGATCTTGAGTGTGCTACATTTGTTCTGGACTATGCTGAAGAAGAGGCTGGGAAAGTTTTAAGAGAATTGCTTCAGCAAGGTAATTCAAATTCAGATTCAGTGGAAGATTTTGAACTTAGAGCACTTCAGTTTGCAGCACCAAGACTGAATATAACATCACAAAGGGCATTATTAGTCGAGAGACGGTCCATCAAGAAGTTGCTCGATAAAATTGAACAAAATGACCCGAAAAAGTATAAGATCTTGAGATATCTTATGTATCTATTGAAAAAGCATGGAAATTACATGGTGGCGGGAGAACACATAGAGAATTTTTATTCTCGTAGAGAAGAAGCAATTGCAAGGGATAACTCTAGTCACGATTCTCTACGAAGAAATCGCGTTGAGTCGGAACGTAGCATGAACTATGATCAGAATAGAACTCACATGAATCAGTCGGATAGAGGGACACCGCCTGAGGAATATAAGTGTCCAATATCCTTAAGATTGATGTATGATCCTGTTATCATTGCTTCTGGAGTAACATATGAAAGAATGTGGATAACAAAGTGGTTTAATGAAGGTAAAACTACATGTCCAAAAACAAAAATGGAACTATCTCATATGGAATTGACTCCAAATGTTGCCATGAAGGACATAATATCAAAGTGGTGCAGAAATAATGGCGTCTCCATTCCTGATCCAAGTAGACATGCAGAAGATTTTCACTTAATGGATGCTTCAATCACCTCCATCAAAAGTTTGGGAAGTTATTTCAATGATTTGAACTTGCCAATGGATTTTAGTAACATGTCACTTGGATCATTGGATACTAGTTTTAATTCAGATGCGTCCCGAGTTCAGCCCAATCATGACTTGAATTTGATGATGGCCAGGAGCGCTGAAAACGCCCAGCCTCACATGCAAAGAGCTCATGTACCAGAGATACATGATTCAGATTTGATGCTCTTGCCTAAACTTCATGATCTTCAATGGGATTCTCAATGTAAGGTCATTGAAGATTTGAAAGATCATATGAAAAGCAATAGCCAAGCTATTTCGTCTGTGTCAGCTGAAAATTTAGTTGAACCAGTAGTCAGATTTTTGTGCAATGCAAATGATTTGCAGGACATAAAAGCACTGAAAGACGGAACTCAGCTGCTGTTGGAATTTGTGAACAACTGCAGAAATGGTATGGCTGACATAAGTGAAGATACATTCATAAAGTTGGCAAATCTTCTTGATTCAGAAGTGATAGGAGAAGTACTTGCCATAATGGAAGAACTTTCCGGAGATGGAAATAGTAAAGCCAAAATTGCAGCATCCGGTGCACTCACTTCTGTCTTAAATTTGCTTGATTCGGATAGCAAAGAGTTCCAACAAAAAGCTATAAGAACAATCTACAATTTGTCCTTCGATATTCAAGTTTGTCCACACATGGTATCTCTTAATTGCATCCCAAAATTGCTTCCATTTTTCAACGACAGATCGGTTTTGAGATACTGCATATATATATTGAAAAACATGTGTGACACTGAAGAGGGTAGAAACTCAATTGCTGAAACTAGAGGATGCATATCTTCTATTGCTGAAATACTTGACACTGGAAGTAATGAGGAGCAAGAACATGCACTTTCTATTCTACAATCTTTATGTTCATGCTCTCGAAGTGTGGATTATTGTAAGTTGATTTTGGATGAGGATGAGAATATCATCACTACTCTTTTCTATATCTCACAGAATGGAAATGATAAAGGAAAAGAAAGTGCCTTGGAATTGATTCAACTTTTGAAAGATGCTAAAGCTGTTGAGAATGAAGATAATCGATCCTCTCGACCAATTACCAACAACACTTCTGGAGAATCCAGCAGTCACACTGAAGAAAATAGATCATCGAAAAGATCGCCATTTCTGAAGAAACTAGGATTGTTCTCAAAAAACAAAAGGTGA 2298 0.379 MRTISGEKVETLLNIRSFQAHSKICIELMNIVESIMRILPDIEAARPRCSSGIESLCLLHNSIEKARLVLQHCSECSKLYLAVTGDTVLTRCLKAKKSLEQSLIPIQGMVPVLLAVEVSRIIDDLECATFVLDYAEEEAGKVLRELLQQGNSNSDSVEDFELRALQFAAPRLNITSQRALLVERRSIKKLLDKIEQNDPKKYKILRYLMYLLKKHGNYMVAGEHIENFYSRREEAIARDNSSHDSLRRNRVESERSMNYDQNRTHMNQSDRGTPPEEYKCPISLRLMYDPVIIASGVTYERMWITKWFNEGKTTCPKTKMELSHMELTPNVAMKDIISKWCRNNGVSIPDPSRHAEDFHLMDASITSIKSLGSYFNDLNLPMDFSNMSLGSLDTSFNSDASRVQPNHDLNLMMARSAENAQPHMQRAHVPEIHDSDLMLLPKLHDLQWDSQCKVIEDLKDHMKSNSQAISSVSAENLVEPVVRFLCNANDLQDIKALKDGTQLLLEFVNNCRNGMADISEDTFIKLANLLDSEVIGEVLAIMEELSGDGNSKAKIAASGALTSVLNLLDSDSKEFQQKAIRTIYNLSFDIQVCPHMVSLNCIPKLLPFFNDRSVLRYCIYILKNMCDTEEGRNSIAETRGCISSIAEILDTGSNEEQEHALSILQSLCSCSRSVDYCKLILDEDENIITTLFYISQNGNDKGKESALELIQLLKDAKAVENEDNRSSRPITNNTSGESSSHTEENRSSKRSPFLKKLGLFSKNKR 765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g01059 765 Pfam Kinesin-associated protein (KAP) 536 661 - -
Trre10g01059 765 PANTHER U BOX DOMAIN-CONTAINING 26 721 - -
Trre10g01059 765 MobiDBLite consensus disorder prediction 725 741 - -
Trre10g01059 765 SUPERFAMILY RING/U-box 269 351 - -
Trre10g01059 765 ProSiteProfiles U-box domain profile. 273 347 IPR003613 GO:0004842|GO:0016567
Trre10g01059 765 MobiDBLite consensus disorder prediction 239 276 - -
Trre10g01059 765 Gene3D - 439 726 IPR011989 -
Trre10g01059 765 SMART Ubox_2 277 340 IPR003613 GO:0004842|GO:0016567
Trre10g01059 765 CDD RING-Ubox_PUB 275 327 IPR045210 -
Trre10g01059 765 MobiDBLite consensus disorder prediction 239 259 - -
Trre10g01059 765 SUPERFAMILY ARM repeat 439 713 IPR016024 -
Trre10g01059 765 MobiDBLite consensus disorder prediction 719 765 - -
Trre10g01059 765 SMART arm_5 589 627 IPR000225 GO:0005515
Trre10g01059 765 SMART arm_5 548 588 IPR000225 GO:0005515
Trre10g01059 765 SMART arm_5 628 669 IPR000225 GO:0005515
Trre10g01059 765 Pfam U-box domain 275 344 IPR003613 GO:0004842|GO:0016567
Trre10g01059 765 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 253 347 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g01059 Trre-Chr10 8517685 8521060 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g01059 16 763 U-box Gene Family AT4G36550 36.979 3.79e-143 436
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g01059 - - psat:127120233 1184.86