Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g01055 ATGTCAACAACAACTTTAGGTTACAATAGAGATTCTTCTTCTTCTTCACCACCTCAAAATCATACATTAATCTTCAATAATCAAACTCAATTTTCACATAATAATCTTCATCCAGATCCAGATCTAACCGTTACAACAACAATACCACCACCACCACCACCACAACAACAACAACAAGTACAACAAACAAAAACATGTTACCGAGAATGTCTGAGAAACCACGCGGCAAGCATGGGAAGCCACGTGGTAGATGGATGTGGAGAATTCATGCCAAGTGGTGAAGAAGGTACACCACAATCCTTCTTATGTGCTGCTTGTAACTGTCACCGTAATTTCCACCGAAAACATGTCCAACAACCACAACAACAACAACAACAAACACAAAATGTTGAAAATGTTTATGTTCCTAATTTTCATACACCTTCATCATCATCTCAAAGATTTTCACAACAAGCTATTGTTGTTCCACCGTTGATGATGAATTTTGGATCAGGAGCAGCAGAATCATCAAGTGAAGATCTAAACATATCAGGTGCAGAATTTTCAATTCAGAATCAACAGCAGAAGAAACCGGTTTTGAAGAAGAGGATAAGGACAAAATTCTCGCAAGAACAAAAGGATAGGATGATGGAGTTTGGTGAAAAAATTGGATGGAAGATTCAAAAGCATGATGAACATGAAGTTCAACAGTTTTGTTCACAAGTTGGTATTAAGAGACATGTTTTTAAAGTTTGGATGCATAATAACAAACAAGCTATGAAGAAACAACAACAGCAACAACAACAACAAATGTAA 795 0.366 MSTTTLGYNRDSSSSSPPQNHTLIFNNQTQFSHNNLHPDPDLTVTTTIPPPPPPQQQQQVQQTKTCYRECLRNHAASMGSHVVDGCGEFMPSGEEGTPQSFLCAACNCHRNFHRKHVQQPQQQQQQTQNVENVYVPNFHTPSSSSQRFSQQAIVVPPLMMNFGSGAAESSSEDLNISGAEFSIQNQQQKKPVLKKRIRTKFSQEQKDRMMEFGEKIGWKIQKHDEHEVQQFCSQVGIKRHVFKVWMHNNKQAMKKQQQQQQQQM 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g01055 264 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 43 252 - -
Trre10g01055 264 NCBIfam homeobox domain, ZF-HD class 194 251 IPR006455 -
Trre10g01055 264 Gene3D - 179 262 - -
Trre10g01055 264 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 67 116 IPR006456 -
Trre10g01055 264 MobiDBLite consensus disorder prediction 1 22 - -
Trre10g01055 264 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 67 116 IPR006456 -
Trre10g01055 264 SUPERFAMILY Homeodomain-like 189 255 IPR009057 -
Trre10g01055 264 Pfam ZF-HD protein dimerisation region 65 117 IPR006456 -
Trre10g01055 264 FunFam Zinc-finger homeodomain protein 2 182 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g01055 Trre-Chr10 8472328 8473122 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g01055 64 256 ZF-HD Transcription Factor Family AT2G18350 51.256 6.70e-64 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Trre10g01055 ZF-HD_dimer 3e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g01055 - - mtr:11413632 329.717