Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre10g01051 | ATGATGCATCATGTTTCTTCTTGTAATGGTTCATCTCACGTGATGGGACACTGTACATGTGGTATGTTTCATGGACAAAACAATAATTCTTCATTATCAATGTTATTCTCTAAACCTTATGATGAAACTTCATCATCTTCTTCTTCTTCTGTTGATTGTACTCTTTCTCTTGGAACACCATCCACTCGTTTTACTGAAGATGAAGAGAAAAGAAACCGTTGTTCTGTTAAAAACTTTTGCTGGGATTTACTTACTCCTAAACAGTACAACAGTGTTCAGTCTCAAACTAAGGTAACACGTGCAAACAACAACAACAACAATGATTCTCTTCTTGCTCGTAGATGTGCTAACTGTGACACTACTTCTACACCTCTTTGGAGAAATGGCCCTCGTGGCCCTAAGTCATTGTGCAATGCTTGTGGGATTAGATTCAAGAAGGAAGAGAGAAGAGCAACCGCAGCCGCCACCACACCGACAGCCGCATCCATCGGTGTAATGGAACCAACTCCGATGTATAACCACCACAACAATAACAATTCATGGTATGTACATCCACAAAACCAAAAGATGCAATGCTTCACTCCGGCAATGAGTAACGAGTTTCGCTTCATCGATGAAACTGATCGTGATTCCGAAAATGGCATTCCCTTTCTCTCTTGGAGACTCAATGTCACTGATAGAACAAGCTTTGTTCATGACTTTACTAGATGA | 711 | 0.4051 | MMHHVSSCNGSSHVMGHCTCGMFHGQNNNSSLSMLFSKPYDETSSSSSSSVDCTLSLGTPSTRFTEDEEKRNRCSVKNFCWDLLTPKQYNSVQSQTKVTRANNNNNNDSLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRATAAATTPTAASIGVMEPTPMYNHHNNNNSWYVHPQNQKMQCFTPAMSNEFRFIDETDRDSENGIPFLSWRLNVTDRTSFVHDFTR | 236 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre10g01051 | 236 | CDD | ZnF_GATA | 114 | 146 | IPR000679 | GO:0006355|GO:0043565 | |
Trre10g01051 | 236 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 112 | 156 | - | - | |
Trre10g01051 | 236 | ProSitePatterns | GATA-type zinc finger domain. | 115 | 140 | IPR000679 | GO:0006355|GO:0043565 | |
Trre10g01051 | 236 | ProSiteProfiles | GATA-type zinc finger domain profile. | 109 | 145 | IPR000679 | GO:0006355|GO:0043565 | |
Trre10g01051 | 236 | PANTHER | GATA TRANSCRIPTION FACTOR 18 | 12 | 236 | IPR044272 | GO:0003700|GO:0009908 | |
Trre10g01051 | 236 | SMART | GATA_3 | 109 | 163 | IPR000679 | GO:0006355|GO:0043565 | |
Trre10g01051 | 236 | Gene3D | - | 111 | 189 | IPR013088 | GO:0006355|GO:0008270 | |
Trre10g01051 | 236 | Pfam | GATA zinc finger | 115 | 149 | IPR000679 | GO:0006355|GO:0043565 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre10g01051 | Trre-Chr10 | 8417357 | 8418793 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre10g01051 | 19 | 236 | C2C2-Gata Transcription Factor Family | AT3G50870 | 44.718 | 5.12e-60 | 189 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2C2-GATA | Trre10g01051 | GATA | 5.6e-18 | CL0167 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre10g01051 | - | - | mtr:11405635 | 340.887 |