Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g01051 ATGATGCATCATGTTTCTTCTTGTAATGGTTCATCTCACGTGATGGGACACTGTACATGTGGTATGTTTCATGGACAAAACAATAATTCTTCATTATCAATGTTATTCTCTAAACCTTATGATGAAACTTCATCATCTTCTTCTTCTTCTGTTGATTGTACTCTTTCTCTTGGAACACCATCCACTCGTTTTACTGAAGATGAAGAGAAAAGAAACCGTTGTTCTGTTAAAAACTTTTGCTGGGATTTACTTACTCCTAAACAGTACAACAGTGTTCAGTCTCAAACTAAGGTAACACGTGCAAACAACAACAACAACAATGATTCTCTTCTTGCTCGTAGATGTGCTAACTGTGACACTACTTCTACACCTCTTTGGAGAAATGGCCCTCGTGGCCCTAAGTCATTGTGCAATGCTTGTGGGATTAGATTCAAGAAGGAAGAGAGAAGAGCAACCGCAGCCGCCACCACACCGACAGCCGCATCCATCGGTGTAATGGAACCAACTCCGATGTATAACCACCACAACAATAACAATTCATGGTATGTACATCCACAAAACCAAAAGATGCAATGCTTCACTCCGGCAATGAGTAACGAGTTTCGCTTCATCGATGAAACTGATCGTGATTCCGAAAATGGCATTCCCTTTCTCTCTTGGAGACTCAATGTCACTGATAGAACAAGCTTTGTTCATGACTTTACTAGATGA 711 0.4051 MMHHVSSCNGSSHVMGHCTCGMFHGQNNNSSLSMLFSKPYDETSSSSSSSVDCTLSLGTPSTRFTEDEEKRNRCSVKNFCWDLLTPKQYNSVQSQTKVTRANNNNNNDSLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRATAAATTPTAASIGVMEPTPMYNHHNNNNSWYVHPQNQKMQCFTPAMSNEFRFIDETDRDSENGIPFLSWRLNVTDRTSFVHDFTR 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g01051 236 CDD ZnF_GATA 114 146 IPR000679 GO:0006355|GO:0043565
Trre10g01051 236 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 112 156 - -
Trre10g01051 236 ProSitePatterns GATA-type zinc finger domain. 115 140 IPR000679 GO:0006355|GO:0043565
Trre10g01051 236 ProSiteProfiles GATA-type zinc finger domain profile. 109 145 IPR000679 GO:0006355|GO:0043565
Trre10g01051 236 PANTHER GATA TRANSCRIPTION FACTOR 18 12 236 IPR044272 GO:0003700|GO:0009908
Trre10g01051 236 SMART GATA_3 109 163 IPR000679 GO:0006355|GO:0043565
Trre10g01051 236 Gene3D - 111 189 IPR013088 GO:0006355|GO:0008270
Trre10g01051 236 Pfam GATA zinc finger 115 149 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g01051 Trre-Chr10 8417357 8418793 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g01051 19 236 C2C2-Gata Transcription Factor Family AT3G50870 44.718 5.12e-60 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Trre10g01051 GATA 5.6e-18 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g01051 - - mtr:11405635 340.887