LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre10g01023	ATGTCTTCCCCTGATGACTCCTCACCGGATAATGCCACACCTGACAATAGTACCCCTGATGACGCCGATAACTCTGATTCACCACCATCACAACCACCGCCTTCAGAATCACCACCACAATCTCCACCTGCTGAGTCACCACCACAAACACCACCACCATCGCCGCCTTCAGATCCCCCGCCATCTCCTTCACAATCACAACCTTCACCACCTACATCAAACAATCCATCCCCAGTCCCACCATCACCCAATGGAGCGGGTCGTTCTCCACCGGCCTCCTCTGGGTCCGGAAATTCACCATCACCTCCACACAAATCATTACCAAAGACATCAACCGAAAACTCAGACGGTAATTACGGAAACTCCAACAACAACAATGATAATACCAATAAGGCAATAATTGGAGCAGTGCTCGGGGTGGGGGCTGTTCTTCTCATTTTGGTCGTTGTCTGCCTTGTTTGCTCCCGGAAGAAGAAAAGAAAGCAAATGTACTATTATGGAGATCACCCATCTCATGCACAAGGGAATAATAATAATAACTATTACAACAGTGGGCCGCACCCAAATTACTACGGAGGTCCACATGGTGATCATGTTGTTAGGCTACAAAATGGAATGGGTCCTAGCGGAATGGGCCCTAGCGGAATGGGTCCTAGCGGAATGGGCCCTAGCGGAATGGGTCCTAGCGGAATGGGCCCTAGCGGAATGGGTCCTAATGGTGGTGGTGGTTGGGGTGCACCACCACCTCCTCCTAACCTAATGAACAGTGCAGACATGAGCTCGAATTACTCAACCGGACCACCACCTCTGCCTCCTCCTTCACCAAGCCTTGCTTTAGGGCTTAAAGGAGGAACATTCACTTATGAGGAATTGGCAGCTGCAACCAATGGATTCATTGATTCAAATTTGATAGGACAAGGCGGTTTTGGTTATGTCCATAAGGGTGTATTACCTAGTGGAAAGGAAATAGCTGTCAAGAGTTTAAAATCGGGTAGCGGACAAGGAGAACGAGAATTCCAAGCTGAGATTGACATCATTAGTCGTGTTCATCATCGTCATCTTGTTTCACTTGTTGGATACTGTATATCTGGTGGCCAAAGAATGTTGGTCTATGAATTTATTCCAAATAACACTATGGAATATCATCTTCATGGAAAGGGTCGACCTACTATGGATTGGCCAACTAGAATGAGGATTGCAATAGGTTCTGCTAAAGGGCTTGCTTATCTTCATGAAGATTGTCATCCTCGCATCATCCATCGTGATATCAAAGCTGCAAATGTCCTTATTGATGACAGCTTTGAAGCAAAGGTTGCTGATTTTGGATTGGCTAAGTTGACAACTGATAATAATACTCACGTATCAACTCGTGTCATGGGAACATTCGGGTACCTAGCCCCTGAATATGCATCAAGTGGAAAGTTGACAGAAAAGTCTGATGTTTTCTCATTCGGGGTCATGCTATTGGAACTTGTAACGGGGAAGCGACCTGTGGATGCCTCAATCACCATGGATGACAGCTTAGTGGACTGGGCTCGACCCCTATTGACTCGTGGACTAGAGGAGGATGGAAACTTTGGTGAGTTGGTGGATCCATTTTTGGAAGGAAACTACAATCCTCAAGAACTCGCCAGAATGGCAGCTTGTGCTGCTGCTAGCATTCGTCACTCTGCCAAGAAGCGTCCTAAAATGAGCCAGATTGTAAGAACATTGGAAGGAGATGTCTCATTGGATGACTTGAAGGAGGGAATGAAGCCAGGGCACAACCCTGTTCACACCTCTTCATCAGGTAGCTCAGAGTACGACACAATGCAGTACAACGCTGATATGCAGAAGTTCAGAAAGGCGGTGTTTAATAATAACAGCAATGAATTTGGCACCAGCAGTTTCTCGAGTGGCGATATGAACCAAACACCAAAGGCGAGGCCGCCACAACCATTGCTTTAA	1947	0.4684	MSSPDDSSPDNATPDNSTPDDADNSDSPPSQPPPSESPPQSPPAESPPQTPPPSPPSDPPPSPSQSQPSPPTSNNPSPVPPSPNGAGRSPPASSGSGNSPSPPHKSLPKTSTENSDGNYGNSNNNNDNTNKAIIGAVLGVGAVLLILVVVCLVCSRKKKRKQMYYYGDHPSHAQGNNNNNYYNSGPHPNYYGGPHGDHVVRLQNGMGPSGMGPSGMGPSGMGPSGMGPSGMGPSGMGPNGGGGWGAPPPPPNLMNSADMSSNYSTGPPPLPPPSPSLALGLKGGTFTYEELAAATNGFIDSNLIGQGGFGYVHKGVLPSGKEIAVKSLKSGSGQGEREFQAEIDIISRVHHRHLVSLVGYCISGGQRMLVYEFIPNNTMEYHLHGKGRPTMDWPTRMRIAIGSAKGLAYLHEDCHPRIIHRDIKAANVLIDDSFEAKVADFGLAKLTTDNNTHVSTRVMGTFGYLAPEYASSGKLTEKSDVFSFGVMLLELVTGKRPVDASITMDDSLVDWARPLLTRGLEEDGNFGELVDPFLEGNYNPQELARMAACAAASIRHSAKKRPKMSQIVRTLEGDVSLDDLKEGMKPGHNPVHTSSSGSSEYDTMQYNADMQKFRKAVFNNNSNEFGTSSFSSGDMNQTPKARPPQPLL	648

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre10g01023	648	MobiDBLite	consensus disorder prediction	624	639	-	-
	Trre10g01023	648	FunFam	Proline-rich receptor-like protein kinase PERK1	374	582	-	-
	Trre10g01023	648	SUPERFAMILY	Protein kinase-like (PK-like)	275	571	IPR011009	-
	Trre10g01023	648	FunFam	proline-rich receptor-like protein kinase PERK1	276	373	-	-
	Trre10g01023	648	SMART	serkin_6	298	534	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre10g01023	648	Pfam	Protein tyrosine and serine/threonine kinase	303	506	IPR001245	GO:0004672\|GO:0006468
	Trre10g01023	648	MobiDBLite	consensus disorder prediction	1	124	-	-
	Trre10g01023	648	MobiDBLite	consensus disorder prediction	26	87	-	-
	Trre10g01023	648	ProSiteProfiles	Protein kinase domain profile.	298	559	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre10g01023	648	MobiDBLite	consensus disorder prediction	624	648	-	-
	Trre10g01023	648	PANTHER	PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4	139	616	IPR047117	-
	Trre10g01023	648	MobiDBLite	consensus disorder prediction	581	601	-	-
	Trre10g01023	648	Gene3D	Transferase(Phosphotransferase) domain 1	374	583	-	-
	Trre10g01023	648	MobiDBLite	consensus disorder prediction	205	277	-	-
	Trre10g01023	648	Gene3D	Phosphorylase Kinase; domain 1	278	373	-	-
	Trre10g01023	648	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	418	430	IPR008271	GO:0004672\|GO:0006468
	Trre10g01023	648	MobiDBLite	consensus disorder prediction	1	25	-	-
	Trre10g01023	648	MobiDBLite	consensus disorder prediction	88	124	-	-
	Trre10g01023	648	ProSitePatterns	Protein kinases ATP-binding region signature.	304	326	IPR017441	GO:0005524

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre10g01023	Trre-Chr10	8158489	8161319	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre10g01023	90	618	Trihelix Transcription Factor Family	AT1G70460	46.382	1.08e-150	451

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_PERK-1	Trre10g01023		PK_Tyr_Ser-Thr	1.7e-45	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre10g01023	-		-	gmx:100777163	751.125