Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g01010 ATGCTCCTTTTTGAACTCTCTCTTGCTTGTTCCTCACAAGATGTTGAAAACAGGACAAGTGTTGATATTGATGATGGTTTTGTCTTTGATATTGATCCTAGTTTGCTTGTGGACAATGACAAACTAGTCATTGATGACTTGATCGGAGAAGGGGCATTCTCAAGTGTATACAAAGGATGGTATGAAGATCGTCCTGTTGCTATTAAGGTTTTAATCCCGGAAAGAACAAAGGAAGCTACACCAGAATGTAAGGAAAAATTTCAGAGGGAGGTTAACTTGTTATCTAAGATTGAACATAACAATGTTATCAAGTTTATTGGAGCTTCTGTGGAACCATCAATGATGTTAATCATGGAACTTATGGAAGGTGGTTCACTTCAAAAAAATTTGAAGAGCATTTATCCAATAACTTTACGTTTGGAACAATGTTTAAGTTATGCTCTTGATATTTCACAAGCTATGGAATATTTGCATGCAAATGGCATCATTCATAGGGACCTCAAGCCTGGTAATTTACTGCTTACAAAAGACCATAATCATGTTAAACTTGCTGATTTTGGGGTTGCTAGAGATAATATATGTGATCAGATGACTTGTGAAGCTGGTACTTATCGATATATGGCTCCTGAGCTATTGAGCAAAGATCCACTTCCAAAAGGAGCAAAGAAAAGCTATGATCATAAGGCAGATGTGTATAGTTTTGCACTAACTCTTTGGTCTTTGATCAAAAATCAAACTCCTTTTAAAGATAGGAAGGACTTCATGGCTGCTTATGCTACTATAAATAATATAAGGCCGAGTTTGGATGAACTTCCTGAAGATATAATTCCTTTGCTGCAATCCTGCTGGGTGGAAGATCCAAAACTCAGACCAGAATTTAAGGAAATAACTAAAACATTGATAAGCATTCTCCATAATATTTACACAACAAAGATTAATGCTCTTGCTAGCATTAAAGAAAATGCTGAAGCTAATGGCGGAACTGAGGCAGAGACCTCAAGGGAAAATGAAAACCTTCTCAAACGTGATATTGAAACTATGGAATCCAATGGCGAAGCAGATTTTGCGCAATTTCGCAGGATGGATGAAAAGAAACCTAAGAAGAAAAGCAAAATCAAACGCTTTTTTTCATATTTTCGAAGCTGTATTGCTTTTTAG 1158 0.3627 MLLFELSLACSSQDVENRTSVDIDDGFVFDIDPSLLVDNDKLVIDDLIGEGAFSSVYKGWYEDRPVAIKVLIPERTKEATPECKEKFQREVNLLSKIEHNNVIKFIGASVEPSMMLIMELMEGGSLQKNLKSIYPITLRLEQCLSYALDISQAMEYLHANGIIHRDLKPGNLLLTKDHNHVKLADFGVARDNICDQMTCEAGTYRYMAPELLSKDPLPKGAKKSYDHKADVYSFALTLWSLIKNQTPFKDRKDFMAAYATINNIRPSLDELPEDIIPLLQSCWVEDPKLRPEFKEITKTLISILHNIYTTKINALASIKENAEANGGTEAETSRENENLLKRDIETMESNGEADFAQFRRMDEKKPKKKSKIKRFFSYFRSCIAF 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g01010 385 SUPERFAMILY Protein kinase-like (PK-like) 35 313 IPR011009 -
Trre10g01010 385 Pfam Protein kinase domain 45 298 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g01010 385 Gene3D Transferase(Phosphotransferase) domain 1 33 340 - -
Trre10g01010 385 SMART serkin_6 42 301 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g01010 385 ProSitePatterns Protein kinases ATP-binding region signature. 48 69 IPR017441 GO:0005524
Trre10g01010 385 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 38 307 - -
Trre10g01010 385 ProSiteProfiles Protein kinase domain profile. 42 308 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g01010 385 CDD STKc_MAP3K-like 48 300 - -
Trre10g01010 385 ProSitePatterns Serine/Threonine protein kinases active-site signature. 162 174 IPR008271 GO:0004672|GO:0006468
Trre10g01010 385 PIRSF TyrPK_CSF1-R 38 126 - -
Trre10g01010 385 PIRSF TyrPK_CSF1-R 119 367 - -
Trre10g01010 385 PRINTS Tyrosine kinase catalytic domain signature 271 293 IPR001245 GO:0004672|GO:0006468
Trre10g01010 385 PRINTS Tyrosine kinase catalytic domain signature 229 251 IPR001245 GO:0004672|GO:0006468
Trre10g01010 385 PRINTS Tyrosine kinase catalytic domain signature 156 174 IPR001245 GO:0004672|GO:0006468
Trre10g01010 385 PRINTS Tyrosine kinase catalytic domain signature 118 131 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g01010 Trre-Chr10 8081839 8086438 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g01010 24 333 MAP Kinase Kinase Kinase AT5G66710 52.412 1.10e-111 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Trre10g01010 Pkinase 3.5e-54 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g01010 - K04427 ccaj:109787878 403.675