Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g01008 ATGAATCATCAAGATCAAATGATGCTCATGTCTCAACTATTCCCCTCTAGTGCTTACACTGAAGTCATTCCTCAACAAGGAGAGAAGAAGAAGCGAAGAAGGCGTACTAAGAAGATCAAAGGAGATAGTGTTAATGAAATGAATAAAAAGAGGAAATTGACTGATGAACAAGTTAATTTGCTTGAACAAAACTTTACAAATGAACATAAACTTGAATCTGAAAGGAAAGATAAGCTTGCAATGGAGCTTGGTTTGGATCCAAGACAAGTAGCTGTTTGGTTCCAAAATCGAAGAGCTAGGTGGAAGAACAGAAAACTTGAAGAAGAATACAATAATCTTAAGAAATTTCATGAATCCACTATACTTGAGAAATGCCTCCTAGAAACCGAGGTATTGAAATTAAGAGAACAACTTAGTGAGGCAGATAAGGAAATTAAGAGGCTTAGAGAGCCTATTGAAAATGTCACAAGCAATAGTTCAAGTACTTCATCAATGTCACAATCAATGGAAGTAGTGGACCCTCCATTTTTGGGTGAATTTGGAGTTGATTATGGATATGATGATGATGTGTTTTTTGTGCCTAATGAGACACATTACTTCAATGGCATGGAATGGGTTACTTTGTACATCTAA 633 0.3586 MNHQDQMMLMSQLFPSSAYTEVIPQQGEKKKRRRRTKKIKGDSVNEMNKKRKLTDEQVNLLEQNFTNEHKLESERKDKLAMELGLDPRQVAVWFQNRRARWKNRKLEEEYNNLKKFHESTILEKCLLETEVLKLREQLSEADKEIKRLREPIENVTSNSSSTSSMSQSMEVVDPPFLGEFGVDYGYDDDVFFVPNETHYFNGMEWVTLYI 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g01008 210 PRINTS Lambda-repressor HTH signature 75 84 IPR000047 GO:0003677
Trre10g01008 210 PRINTS Lambda-repressor HTH signature 84 100 IPR000047 GO:0003677
Trre10g01008 210 FunFam homeobox-leucine zipper protein ATHB-40 43 112 - -
Trre10g01008 210 MobiDBLite consensus disorder prediction 21 42 - -
Trre10g01008 210 ProSiteProfiles 'Homeobox' domain profile. 44 104 IPR001356 GO:0003677
Trre10g01008 210 Pfam Homeodomain 49 103 IPR001356 GO:0003677
Trre10g01008 210 ProSitePatterns 'Homeobox' domain signature. 79 102 IPR017970 GO:0000981|GO:0006355
Trre10g01008 210 Coils Coil 96 116 - -
Trre10g01008 210 Coils Coil 44 64 - -
Trre10g01008 210 Gene3D - 40 113 - -
Trre10g01008 210 SUPERFAMILY Homeodomain-like 49 112 IPR009057 -
Trre10g01008 210 SMART HOX_1 47 108 IPR001356 GO:0003677
Trre10g01008 210 CDD homeodomain 49 105 IPR001356 GO:0003677
Trre10g01008 210 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 21 163 IPR045224 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g01008 Trre-Chr10 8072030 8074285 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g01008 7 210 Homeobox Transcription Factor Family AT4G36740 54.028 8.03e-68 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Trre10g01008 Homeodomain 2.6e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g01008 K09338 - gmx:100809616 283.108