Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g00985 ATGTCGAGTGGTTTTGGAGAATCGACAAGTGCGTCTCAACCGAATCCATCGTGTTCTTCAGGGAACAGTTCAAACAATGATGCTGGTGATTTTGAATGTAACATATGTTTTGATTTGGCTCAGGATCCTGTGATTACACTTTGTGGTCATTTGTTCTGTTGGCCATGTCTTTATAAGTGGTTACATCATCATTCTCATTCACAAGAATGTCCTGTTTGTAAAGCACTTGTTCAGGAAGAGAAATTGGTTCCTCTTTATGGTAGAGGAAAATCGCAAACTGATCCGAGGAATAAATCGTATCCTGGAATGGAGATTCCTCGTCGCCCTTCTGGACAGAGGCCAGAAACGGCGAGTCCTCCGCCTCCTCCTGATGCGAATTATCATACTGGAATGGCTGGATTTGGATTGATGGGTGGATTTATTCCGATGGCAACTGCTACATTTGGAAATATTGCGCTTTCGACAGGTTTTGGTGGGTTTGCTGGGCTTATCCCATCACTTTTCAATATTCACTTTCATGGTTTTCAGGATGCTACTGTTTATGGGACAACGTCTGGCTATCCCTTTGGGTTTAACACGTTTCAGGGTGGGAATACTAGAGATTTTAATTCACCGGCTAACGGCCAAGTGCAGCGGCAGGAGGATAATGTTTTGAAGAATTTGCTTATGTTGATTGGATTTCTTGTCGTTATTACGGTTATTTTTGTTATGTAA 714 0.423 MSSGFGESTSASQPNPSCSSGNSSNNDAGDFECNICFDLAQDPVITLCGHLFCWPCLYKWLHHHSHSQECPVCKALVQEEKLVPLYGRGKSQTDPRNKSYPGMEIPRRPSGQRPETASPPPPPDANYHTGMAGFGLMGGFIPMATATFGNIALSTGFGGFAGLIPSLFNIHFHGFQDATVYGTTSGYPFGFNTFQGGNTRDFNSPANGQVQRQEDNVLKNLLMLIGFLVVITVIFVM 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g00985 237 MobiDBLite consensus disorder prediction 86 125 - -
Trre10g00985 237 Pfam Zinc finger, C3HC4 type (RING finger) 32 73 - -
Trre10g00985 237 ProSiteProfiles Zinc finger RING-type profile. 33 74 IPR001841 -
Trre10g00985 237 ProSitePatterns Zinc finger RING-type signature. 48 57 IPR017907 -
Trre10g00985 237 FunFam E3 ubiquitin-protein ligase RNF185 isoform X2 16 87 - -
Trre10g00985 237 SMART ring_2 33 73 IPR001841 -
Trre10g00985 237 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 18 96 IPR013083 -
Trre10g00985 237 MobiDBLite consensus disorder prediction 1 23 - -
Trre10g00985 237 SUPERFAMILY RING/U-box 29 86 - -
Trre10g00985 237 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 12 231 IPR045103 GO:0005783|GO:0006511|GO:0061630
Trre10g00985 237 CDD RING-HC_AtRMA-like 31 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g00985 Trre-Chr10 7878164 7878877 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g00985 22 235 C3H Transcription Factor Family AT2G23780 61.751 7.47e-88 258
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g00985 K10666 - gmx:100814783 382.489