Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g00980 ATGCATCTCTTTCCCTTCACCCCTCTTTTCATTTTCACACTCTTTTTCTTTACCACCAACATCTCCATCATCCTAGGACAACAACCTTACATTGGTTTAGCAACAACAGCATGTCCTCGAAAAGGCGATGCAAAATCAATCCGAGGCTACACATGTAACGGCAAAACTCAAACATGTCAAGCATACCTCACCTTCAGAACTCAACCAATTTACTCCTCAGTTTCAACAATATCAAATTTACTAGGCTCAAACCCGTCTCAACTCGCCGAAATAAACTCCGTTTCTTTAAACGAAACATTCGAAACAAACAAAATGGTAATTGTTCCTGTTAATTGTTCTTGTTCAGCTAATTCACTTACTTTAACACAAGCTACAATTTATCCATTTACAACACTTCTTGTTCCTCTTTTTGATAAGCCTTCAAGTTCTCAAATTCAACCGGTTTCGGTTTCACCACCTCAACAACCTTCTCCTTCATCGTCCTCGCCTTCTTCAACCGATAAAAAATCGAAAAAAACTTTGGTTTATGTTATTGTTGGAGTACTTGGAGGACTTGTAGTTTTAGCTTTAATATTAGTTCTATATGCTTTCATAATTTTCTTCAAAAAGGGTAAAAAGAAAAATGATTCTTTGGTGAATGTTTCGGAGAGTACTATTACTAGTTATGAGGCGAAAGAGAAACCGGTGAAGAAAGAAGAAGAAAAATTGTTAGAGATTATTATATCTGGTATAGCTCAATCTTTCAAAGTGTATGATTTTGATGAAATTAAGGTTGCAACAAATGATTTTAGTCCAAGTTGTTTGATTAAAGGAAATGTTTATCGCGGTGTTATTAACGGCGATTTAGCTGCAATTAAGAAAACAGAAGGAGATGTTTCAAAAGAGATACAAATTCTTAACAAAGTTAATCATTCTAATGTTATTCGTCTTTCGGGTGTTAGTTTCAATGAAGGACATTGGTATCTTGTTTATGAGTATGCTGCAAATGGAACATTGAATGAATGGATATTTTCTAACAAAATTGATTATGGAAAGTTTCTAAGTTGGATTCAAAGAATAAAGATTGCATTAGATGTAGCTATTGGAGTTGAATATCTTCATAGTTTTACTTCTAATCCATATATTCATAAGGATCTAAAGTGTAGTAATATTCTTCTTGACAATGATTTCAAAGCAAAGGTTTCAAATTTAAGGCTTGCAAGATGTGTTGAAGGAGTTGAAAATGATGAAGAATTTGTTGCTACAAGACATATTGTTGGGACAAGAGGTTACATGGCACCAGAATATTTGGAAAATGGAATGGTTTCTACAAAGATTGATGTTTATGCATTTGGTGTGTTGATGTTGGAAATGATTACAGGAAAAGAGGTTGGTTTTATTTTATCAAAAGATAATGAGAATTTGTTGGATGTTTTGAGTGGAATAGTTGGTATTGGTAAGGAAAGTTGTGATGAAAAGTTGAAGGAGTTTATGGATCCTTCATTGGAAGGAAATTATCCAATTGAACTTGCTATGTTTGTGATTGAAATTATTGATGATTGTTTGAAGAAAGATCCAATAGATCGTCCTGAAATGGAGGAGATTGTACCAATTTTGTCAAGAACTTTGAACTCTTCATTGAGTTGGGAAATGTCAGTGAATAATGTTTCTATGAAGCACGGACACTCTTTGAATTAG 1677 0.3375 MHLFPFTPLFIFTLFFFTTNISIILGQQPYIGLATTACPRKGDAKSIRGYTCNGKTQTCQAYLTFRTQPIYSSVSTISNLLGSNPSQLAEINSVSLNETFETNKMVIVPVNCSCSANSLTLTQATIYPFTTLLVPLFDKPSSSQIQPVSVSPPQQPSPSSSSPSSTDKKSKKTLVYVIVGVLGGLVVLALILVLYAFIIFFKKGKKKNDSLVNVSESTITSYEAKEKPVKKEEEKLLEIIISGIAQSFKVYDFDEIKVATNDFSPSCLIKGNVYRGVINGDLAAIKKTEGDVSKEIQILNKVNHSNVIRLSGVSFNEGHWYLVYEYAANGTLNEWIFSNKIDYGKFLSWIQRIKIALDVAIGVEYLHSFTSNPYIHKDLKCSNILLDNDFKAKVSNLRLARCVEGVENDEEFVATRHIVGTRGYMAPEYLENGMVSTKIDVYAFGVLMLEMITGKEVGFILSKDNENLLDVLSGIVGIGKESCDEKLKEFMDPSLEGNYPIELAMFVIEIIDDCLKKDPIDRPEMEEIVPILSRTLNSSLSWEMSVNNVSMKHGHSLN 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g00980 558 FunFam PTI1-like tyrosine-protein kinase 3 327 546 - -
Trre10g00980 558 Pfam Protein kinase domain 286 529 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g00980 558 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 10 117 - -
Trre10g00980 558 SUPERFAMILY Protein kinase-like (PK-like) 245 532 IPR011009 -
Trre10g00980 558 Gene3D Phosphorylase Kinase; domain 1 203 326 - -
Trre10g00980 558 MobiDBLite consensus disorder prediction 144 168 - -
Trre10g00980 558 ProSitePatterns Serine/Threonine protein kinases active-site signature. 374 386 IPR008271 GO:0004672|GO:0006468
Trre10g00980 558 ProSiteProfiles Protein kinase domain profile. 236 536 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g00980 558 SMART serkin_6 263 532 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g00980 558 Gene3D Transferase(Phosphotransferase) domain 1 328 552 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g00980 Trre-Chr10 7811075 7813048 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g00980 51 545 Receptor kinase-like Gene Family AT2G23770 36.920 7.94e-98 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Trre10g00980 Pkinase 1.4e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g00980 - - gmx:100815842 474.937