Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g00978 ATGGTTTCTAAAGGTACCAATTCTCTCCTTTGGAGTTTTATTTTGGCCATTCTGATTGCCATAGTTTTCACTCCAAAATTTAGTTTTGCCAAACAATCAAAGTTAACGGGCATGAAAATGAACATGATTGATCGATGTTGGAGACCAAATCCTGAATGGAGGAAGCATAGACAACAACTAGCAACTTGCTCTGTGGGCTATGTTGGAAAGATGACAAACAACATTGGTAATGGCCTCATCCATTATAAAGTTACCGACCCAAATGACGATCCCACAAATCCCAAACCTGGTACGTTGAGATATGGAGCTTCTGTAATTCAAGGTAAAGTGTGGATCACATTCCAAACAGACATGAACATCAAGCTCATGAAACCACTTCTCATTAGTAGTTTCACTACCATCGATGGTCGTGGCGTTAATGTGCACGTTGCTGATAATGCATGCTTAATGATATTTAAGGCCACCAACATAATCATTCATAGTCTTCGAATTCATCACTGCAAAGCTCAAGCACCGGGGATGGTGATGGGGCCTAATGGAAAGGTAATTCACATTGGTCCAGTAGATGGAGATGCAATTAGATTAGTCACGGCCTCAAAAATTTGGATTGATCATAATACACTTTATGAATGTGAAGATGGTCTTCTTGATGTCACAAGAGGTTCTACTAATGTCACTGTATCCAATAATTGGTTTAGAGAACAAGATAAGGTTATGCTTCTAGGTCATGATGATGGGTATGTGAGGGACATGAACATGAAGGTTACTGTTGTGTACAATCATTTTGGACCTAACTGCAACCAACGAATGCCAAGAATTCGACATGGATATGCACATGTAGCAAATAATCTTTACTTAGGGTGGATGCAATACGCCATCGGTGGAAGCATGGGGCCTAGCCTTAAAAGTGAATCTAACCTCTTCATAGCACCAAAAGTTGGAAGTAAAGAGGTAACATGGAGAAAAATTGGTGGTACCAATGGAGATAGATGGGAATTCCATTCGGTTAGGGATGCATTTGAAAATGGAGCCTCTTTCGCAGTAACAAAAGGAGGACGGGTGCCAAAGCCGAATTATAGCAAAGAACATAAATTTGAAGTTGTTGATGTCAAATCTGTTAGATCATTGACAAAATCATCCGGTGCATTTAAATGTAGTAGAACCTCTATATGTTGA 1176 0.3971 MVSKGTNSLLWSFILAILIAIVFTPKFSFAKQSKLTGMKMNMIDRCWRPNPEWRKHRQQLATCSVGYVGKMTNNIGNGLIHYKVTDPNDDPTNPKPGTLRYGASVIQGKVWITFQTDMNIKLMKPLLISSFTTIDGRGVNVHVADNACLMIFKATNIIIHSLRIHHCKAQAPGMVMGPNGKVIHIGPVDGDAIRLVTASKIWIDHNTLYECEDGLLDVTRGSTNVTVSNNWFREQDKVMLLGHDDGYVRDMNMKVTVVYNHFGPNCNQRMPRIRHGYAHVANNLYLGWMQYAIGGSMGPSLKSESNLFIAPKVGSKEVTWRKIGGTNGDRWEFHSVRDAFENGASFAVTKGGRVPKPNYSKEHKFEVVDVKSVRSLTKSSGAFKCSRTSIC 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g00978 391 PANTHER PECTATE LYASE 18-RELATED 35 387 IPR045032 GO:0030570
Trre10g00978 391 Gene3D - 40 384 IPR012334 -
Trre10g00978 391 PRINTS Pollen allergen Amb family signature 362 385 IPR018082 -
Trre10g00978 391 PRINTS Pollen allergen Amb family signature 125 141 IPR018082 -
Trre10g00978 391 PRINTS Pollen allergen Amb family signature 189 210 IPR018082 -
Trre10g00978 391 PRINTS Pollen allergen Amb family signature 291 310 IPR018082 -
Trre10g00978 391 PRINTS Pollen allergen Amb family signature 88 113 IPR018082 -
Trre10g00978 391 PRINTS Pollen allergen Amb family signature 331 355 IPR018082 -
Trre10g00978 391 PRINTS Pollen allergen Amb family signature 269 288 IPR018082 -
Trre10g00978 391 SMART amb_all 117 314 IPR002022 -
Trre10g00978 391 SUPERFAMILY Pectin lyase-like 34 385 IPR011050 -
Trre10g00978 391 Pfam Pectate lyase 127 308 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g00978 Trre-Chr10 7804976 7806556 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g00978 71 318 Polysaccharide Lyase AT5G09280 73.387 6.86e-143 406
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g00978 K01728 - gmx:100780437 664.455