Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g00967 ATGGGTTGGTTTACCAAGTTTCTCAATGGCTCTAATCATAGAATTTCAAGAGGACAATACAATGGCAAACATGGTGATGATAGAGTCTGGGATAATCATCATAGTTCAGTGGATGATTTGACGGATGTCGAGAAAGAAGACATCGACCGTGCAATTGCACTGTCTCTATCAGAGGAGGATCTGAAAGGGAAAAAAGTTGTTGTTGAGGATGAGTCTCAGTCTGAAGAAGACGAACCACTTTGTAAAATTGACGAGCAAGATGAGAATGTTGGTAAAGTTCGACTAGATGAAGATGAGCTGCTGTTAGGTAAAATTCCGCAGGATGAAAATGAACGACGTGCCAAAGATCAACTTGAGGAAGATGAGCAACTTGCAAAGGCAATTCAATTAAGTTTGAACCTCGGTTCTCCTCGACACATCGGTTCTCCTCCTCAACATGGCAATGGTTCCTTATCTCAACCTTCTCCCCACGTCTTTCCACCTGGATTCAGAATCTGTGCTGGATGCAATGCTGAGATTGGCCATGGTAGATTTTTAAGTTGCATGGGAGGTGTCTGGCATCCACAATGCTTCGTCTGTCATGCTTGCCATCTTCCAATCACTGATTATGAGTTTTCCATGTCTAGCAACCGTCCTTACCATAAATCCTGCTACAGGGAGAAGCATCATCCAAGATGCGATGTTTGCAAGAATTTTATTCCAGCTAATTCGGCTGGACTCATTGAGTATAGAGCTCATCCTTTCTGGATACAAAAATACTGCCCAACACACGAGCTCGACCGTACTCCTCGTTGTTGTAGCTGTGAAAGAATGGAGCCAAAGGATTCAAAATATCTTTTGCTTGATGATGGTCGAAAACTATGTCTCGAATGTCTAGACTCAGCAATTATGGATAGTCATGAATGTCAACCTCTCTACCTTGAAATACTAGAATTTTATGAAGGTTTAAATATGAAATTGGAGCAGCAAGTTCCTATGCTTTTGGTTGAGAGACAAGCACTGAATGAGGCCATGGAGGGAGAAAAGAACGGTCATCACCATTTACCTGAAACTAGAGGACTCTGCTTGTCAGAAGAACAAACTGTCACCACCATTTTGAGAAGACCAAGCATAGGGGCAGGACACTGTGTCACTGACATGATAACCAAGCCTTATAGACTGACCCGTCGATGTGAAGTGACAGCCATTCTTGTTTTGTATGGCCTTCCTAGGTTGTTGACAGGATCAATCCTAGCTCATGAGATAATGCATGCATGGCTCAGGCTTAAAGGTTATCCCAACCTAAGTCCTGAAGTTGAAGAAGGAATATGCCAAGTATTGGCTCATATGTGGTTAGAATCAGAGCTCTATTCTGGATCTGGGAATAATAACGCACCGTCTTCGTCTTCATCATCTGCAATGCCTCTGTCCTCTTCTGCATCATCGAAGAAGGGTAAACGGTCTGATTTTGAGAAGAAACTGGGCGAGTTTTTCATACATCAGATTGAGTCAGATACCTTGCCAGCCTATGGAGATGGGTTCAGATTGGGTAACCAGGCAGTACTTAAGTATGGGCTCAAAAGTACCCTTGATCATATCCATTTGACTGGAACTTTTCCATGTTGA 1605 0.4287 MGWFTKFLNGSNHRISRGQYNGKHGDDRVWDNHHSSVDDLTDVEKEDIDRAIALSLSEEDLKGKKVVVEDESQSEEDEPLCKIDEQDENVGKVRLDEDELLLGKIPQDENERRAKDQLEEDEQLAKAIQLSLNLGSPRHIGSPPQHGNGSLSQPSPHVFPPGFRICAGCNAEIGHGRFLSCMGGVWHPQCFVCHACHLPITDYEFSMSSNRPYHKSCYREKHHPRCDVCKNFIPANSAGLIEYRAHPFWIQKYCPTHELDRTPRCCSCERMEPKDSKYLLLDDGRKLCLECLDSAIMDSHECQPLYLEILEFYEGLNMKLEQQVPMLLVERQALNEAMEGEKNGHHHLPETRGLCLSEEQTVTTILRRPSIGAGHCVTDMITKPYRLTRRCEVTAILVLYGLPRLLTGSILAHEIMHAWLRLKGYPNLSPEVEEGICQVLAHMWLESELYSGSGNNNAPSSSSSSAMPLSSSASSKKGKRSDFEKKLGEFFIHQIESDTLPAYGDGFRLGNQAVLKYGLKSTLDHIHLTGTFPC 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g00967 534 Gene3D Cysteine Rich Protein 160 223 - -
Trre10g00967 534 MobiDBLite consensus disorder prediction 455 476 - -
Trre10g00967 534 CDD LIM_DA1 166 218 - -
Trre10g00967 534 SMART uim 43 62 IPR003903 -
Trre10g00967 534 SMART uim 119 138 IPR003903 -
Trre10g00967 534 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 119 138 IPR003903 -
Trre10g00967 534 Pfam Protein DA1 315 528 IPR022087 -
Trre10g00967 534 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 193 247 - -
Trre10g00967 534 ProSiteProfiles LIM domain profile. 164 224 IPR001781 -
Trre10g00967 534 ProSitePatterns LIM zinc-binding domain signature. 166 200 IPR001781 -
Trre10g00967 534 PANTHER PROTEIN DA1-RELATED 2 3 533 IPR045218 -
Trre10g00967 534 Pfam LIM domain 166 221 IPR001781 -
Trre10g00967 534 MobiDBLite consensus disorder prediction 455 480 - -
Trre10g00967 534 SMART lim_4 165 217 IPR001781 -
Trre10g00967 534 FunFam Protein DA1-related 1 160 219 - -
Trre10g00967 534 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 158 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g00967 Trre-Chr10 7658948 7663139 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trre10g00967 DA1-like 6.4e-102 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g00967 - - gmx:100817969 853.588