Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g00966 ATGGGAATAGCAACACTAGTACCATTTCCTTCTTCTTCTTCTTCCATTATTCATTTGAAGACATATCATAACAATAAACATAACCAAGAAACCTTGAAATATTGTTCAAATTCTATGTCCCAAGATTATCAGCAAACAATCTTCGGTTTCTCCTCGAATGGATTCGAGAGATCATCGCAAGAGCAGCAACAACAACAGATCCATAGGGACAAAGTAAGGATGCTACAAGGGTTTAATTCAGCACCATTAGTAGAAGGAGAAGTTGTGGAAGAAAGAGGGGGTGTATATGAAACAGGAGGTATGTTATCAGAGATGTTTAATTTTGCTGATCCTTCAACCACAGCTGAATTGTTAGAAACCGCGAATTTTCGTTCTTCTTCTTCTTCAAGACAACAAGAACATCAACAACAACAAACAACATCAGAAAACAACAATTGGTATGGTAATAGTAGACAAGGGATGCAGCAGCAGCATCAGCAGATGTCAAACATTAACGCATCTGCTGCTGATTCAGCTGCTGCTATGCATCTTTTTCTCATGAACCCTACTCAAACAACTTCATCATCTTCCCCTCCTCATCAAAATTCTTCAACTCTTCACATGTTACTACCTAACCCTCCCTCTAATAATCCCTTACAAGGTTTTCCAAATTCCGGTAATTTCGGACAATTCACATCATGGAGTAGTAGTACTACTCAAGAAGGTCAAGGTCAAGGTCATGGACAAGGTCAAGGTCTTTCATTATCATTATCTTCTTCATTGCAAGCTGCAAAAGCTGAGGAAGAATTAAGAATGGGAGGAGGAGGAGAAAGTGGTAATTTTATGTATAATTATAATAATATTCAAGGTGTAGGTGGAGGAGGAGGAGGAGGAGGAGGAGGACCATCTTCATCATCATATGCTCCGTACAAATTAAATCATCAACAAGCATTGAATTTACAATTGCAAGGAGGAGGAGGAGGAGGGACCAATATTGGAGGATATCAATTATTACAAAGTCATCAAGGATTTGGAAGTGTAGTAAATGTTTTAAGAAATTCAAAATATATGAAAGCAACTCAAGAATTGCTTCAAGAGTTTTGTAGTGTTGGGAGGGGTAATTTTATTAAGAAGAATAAGTTTAATTCAAACCCTAATAATAATTGCTCCTCCAATGCTGTTGGTGGTGATAACATTCCTTCATCTTCATCAAAAGATCATCCTCCTCTTCCTTTGTCAGCTGGTGATAGGATTGAGCATCAAAGAAGGAAGGTCAAACTTCTAGCCATGCTTGATGAGGTGGATAGGAGATACAATCACTATTGTGAACAAATGCAAATGGTAGTGAACTCATTTGATCTAATGATGGGTTTTGGAGCCGCGGTTCCATACACCGCGCTAGCTCAGAAAGCAATGTCTCGACATTTCCGGTGTCTAAAGGATGCAATAACAGTACAACTGAAGCAAAGTTGTGAGATACTTGGAGAGAAAGAAGGTGCAGGAGGAGGTTTGACAAAAGGAGAGACCCCTAGGCTTAAGGTACTTGAACAAAGCCTAAGACAACAAAGAGCATTTCATCAAATGGGTATGATGGATCAAGAAGCTTGGAGACCTCAAAGAGGATTGCCTGAACGTTCTGTCAATGTTTTGAGAGCTTGGCTTTTTGAGCATTTTCTACACCCGTATCCAAGTGATGCAGATAAGCATCTATTGGCACGACAAACTGGGCTATCAAGAAATCAGGTATCAAATTGGTTCATAAATGCAAGAGTTCGGTTGTGGAAACCAATGGTGGAAGAGATGTATCAACAAGAACTTAATGAAGCAGAGTGTGCAACAGAAGACAAAGAAAGAAACCAAAGCAATAGCAACAGTTGCAACCAAACACAAACACCACCAACATCATCAGCAACAGAACCACCAACACCAACAAGAAAAAGACCCGATATCATTCCGGAAAACGACGCTTCATTAGTTCCAATCAATAGACAACAATCCTTCTCTGAAAATCAAGCAATGCAATCCACCACCGTCAACGCCGCCGCCGTTTCTGAGGTGGTTCCACCCTTTGATTCTGACATGCCACCACAACAATCGATGGCGATGGATGACGCGAATCGATATGGCAACTTAGTTCCACAAGATTATGAGACAGGCTCTATAAGTGCTGAAATTGGATCATCAACTCTTATTAGATTCGGGCCCACTACTGGTGATGTGTCACTCACATTAGGGTTACGCCACGCCGGGAATGTGTCCGATGAAACAAATTTCTCTATTAGAGACTTCGGAAGCATGTAG 2280 0.4039 MGIATLVPFPSSSSSIIHLKTYHNNKHNQETLKYCSNSMSQDYQQTIFGFSSNGFERSSQEQQQQQIHRDKVRMLQGFNSAPLVEGEVVEERGGVYETGGMLSEMFNFADPSTTAELLETANFRSSSSSRQQEHQQQQTTSENNNWYGNSRQGMQQQHQQMSNINASAADSAAAMHLFLMNPTQTTSSSSPPHQNSSTLHMLLPNPPSNNPLQGFPNSGNFGQFTSWSSSTTQEGQGQGHGQGQGLSLSLSSSLQAAKAEEELRMGGGGESGNFMYNYNNIQGVGGGGGGGGGGPSSSSYAPYKLNHQQALNLQLQGGGGGGTNIGGYQLLQSHQGFGSVVNVLRNSKYMKATQELLQEFCSVGRGNFIKKNKFNSNPNNNCSSNAVGGDNIPSSSSKDHPPLPLSAGDRIEHQRRKVKLLAMLDEVDRRYNHYCEQMQMVVNSFDLMMGFGAAVPYTALAQKAMSRHFRCLKDAITVQLKQSCEILGEKEGAGGGLTKGETPRLKVLEQSLRQQRAFHQMGMMDQEAWRPQRGLPERSVNVLRAWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPMVEEMYQQELNEAECATEDKERNQSNSNSCNQTQTPPTSSATEPPTPTRKRPDIIPENDASLVPINRQQSFSENQAMQSTTVNAAAVSEVVPPFDSDMPPQQSMAMDDANRYGNLVPQDYETGSISAEIGSSTLIRFGPTTGDVSLTLGLRHAGNVSDETNFSIRDFGSM 759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g00966 759 SMART HOX_1 529 593 IPR001356 GO:0003677
Trre10g00966 759 Pfam Homeobox KN domain 546 585 IPR008422 GO:0003677|GO:0006355
Trre10g00966 759 Pfam Associated with HOX 343 477 IPR006563 -
Trre10g00966 759 Coils Coil 592 612 - -
Trre10g00966 759 MobiDBLite consensus disorder prediction 379 410 - -
Trre10g00966 759 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 230 615 - -
Trre10g00966 759 ProSiteProfiles 'Homeobox' domain profile. 526 589 IPR001356 GO:0003677
Trre10g00966 759 MobiDBLite consensus disorder prediction 182 253 - -
Trre10g00966 759 CDD homeodomain 529 590 IPR001356 GO:0003677
Trre10g00966 759 SUPERFAMILY Homeodomain-like 531 596 IPR009057 -
Trre10g00966 759 FunFam BEL1-like homeodomain protein 4 532 594 - -
Trre10g00966 759 MobiDBLite consensus disorder prediction 611 628 - -
Trre10g00966 759 SMART prehox3 338 478 IPR006563 -
Trre10g00966 759 MobiDBLite consensus disorder prediction 379 401 - -
Trre10g00966 759 Gene3D - 532 594 - -
Trre10g00966 759 MobiDBLite consensus disorder prediction 122 167 - -
Trre10g00966 759 MobiDBLite consensus disorder prediction 602 646 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g00966 Trre-Chr10 7624337 7633966 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g00966 1 576 Homeobox Transcription Factor Family AT4G36870 47.950 1.65e-147 441
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Trre10g00966 POX 6.3e-49 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g00966 - - cam:101513121 695.271