Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g00965 ATGGAAGTACTTCCTTGTTCTGGTGTTCAATATGCTGGCGAATCTGATTGCCCTCAACGCAATTCAGAAACAACTTTTGTCTATCAGGAAGAATTTAATTGCCCTGAAAATAGCGAACATGCTAAATTGGTAGATGGTCAACTGAGTGAATCATTGCATATGCAAGGGATAGAGATAGATAGGCAAGGTGAGGGGACACACAATGTAGGTGATTTGTTAATTAATTCGAATTGTCAAGTGGTAGACCAAAAGGATTATGGCGGTTTTCATGATTTTGATGAAGATATGATAAATGAACGGTACTTAACCTCTGAAAATTCTCTCTCTGCTGTTGATACAATTGAGAGTGAATCCCCAAACAATGGTAGGGAAGGAGACTTGTCATTTTCTGAACCCAAGTGGTTAGAGGGGGATGAATCTGTCGCATTGTGGGTAAAGTGGAGAGGGAAGTGGCTGGCTGGTATCCGATGTGCAAGGGCAGACTGGCCATTATCAACTTTGAGAGCCAAACCAACTCACGACCGAAAGAAATATTTTGTCATATTTTTTCCGCACACAAAGATTTATTCTTGGGCCGATATGCTGCTTGTTAGGTCAATCGATGAGTATCCGCATCCTGTTGCACACAAGACTCATCAAGTAGGACTGAAATTGGTAAAGGACTTAACAGCTGCACGGAGGTTTATAATGCAAAAGCTAGTTGTTGGTATGCTGAACATCGTTGATCAGTTTCATCTGAATGCTTTGACAGAAACGGCTCGTGATGTGAAGGTCTGGAAGGAATTCGCCATGGAGGCTTCTCGTTGTAATGGTTATTCCGATTTTGGAAGATTGCTTCTAAAGATATACAATAGTATCCTGGGGCATTACATAACTGCTGATTGGTTACAACAATCTTCTCCCTCTTGGGTTGAACGATGTCAGAGTGCAAATAGTGCTGAATCGGTAGAGCTGCTGAAGGAGGAATTGTTTGATTCTATTTTATGGAATGATGTCAACAATCTCGGGGACTCACCGGTGCAACCTATATTAGGTTCTGAATGGAGAACCTGGAAGCATGACGTAGCAAAATGGTTCTCGCCATCATCTCCTGTATCTAGCAGCAAAGACACTCCTACTAGGCAGATTTCTGATGATTCATACCTAACAAACCTTCAGGCTTCTAGAAAAAGGCCTAAACTTGAAGTTCGTCGTGCAGATACACATGCTTCAAAAGTGGAATTCAAGGGTTCAGATCACACCATTTCTCTTGTGAATGACACTGGTTTCTTTAATAATCAAGACACACTGAGCGCATTAACAGCTGAGACTCTTAAACATGAAAATAATAGGAAGGTATCTATCACAAATGATTTGTCCAGTAATTTGACCAATAAATGGAATGAAATTGTAGTTGAGGCTGCTGATTCTGATTTCTTGTATACCAAAGAAAATGAATTAACACCTATAAATGAAATGGCTATTGTAAAATCTGTGGACCCTGGTAGTAAGAATCGACAGTGTATAGCTTTTATTGAAACCAAGGGAAGACAGTGCGTGAGATGGGCAAATGAGGGAGATGTTTACTGTTGTGTGCATTTATCCTCTCGTTTTTTGGCTGGCTCAGCAAATGCCGAAACTCCGGGTCAAACTGATACTCCTATGTGTGATGGTACAACTGTCGTGGGTACTAAATGCAAGCATCGGTCTCTACCTGGATCGTTATACTGTAAGAAACACCGGCCTTATGCTGAAACCGAACAGAACTCAAGTTTAGCCCAAAATACTATGAAGAGGAAGCATGAAGAAAATTATACTGGTTCAGAGAACATGATCTGCAAAGACATGGTATTGGTAAATGCTGAAACTGCACTGCAAGTGGTTCCAGTGCCATCCATTGCTGGTGATTCTTTACATGGAGAAATGATCTTATATGAAAAGCCAATGCATTCTGAAAAAGGTCATGTCATGGAGGCTCCGATCTGTATAGGTTCTCCTCCATTTGATAATACGAATCCTTGTAGGGAATTTCCTAAGCGCTATTCCTTGTACTGCGAAATCCACCTTCCAAGTTGGCTTAAACGAGCAAGAAATGGGAAGAGTAGAATAGTATCAAAAGAAGTGTTCTCAGAACTTTTGAGGGGCTGCAGCTCATGGCAGCAAAAGGTACATCTGCATGAAGCGTGCGAGCTTTTTTACAGGCTATTCAAAAGCATTTTATCACTAAGAAACCAAGTTCCCAAGGATGTTCAATTCCAATGGGCTTTGACTGAAGCCTCTAAAGAAACTGGTGTTGGAGAATTTTTTACGAAGTTGGTTCAAAGTGAAAAAGAGAGAATCAAATCAATGTGGGGATTCAATGATGACATGGATGTACCCTCTGTAGTAGAAGAACAACAACAACCACTCTTGCTCATGCCACCCCCAGTTAATCATAGCTTTGATAATGAGAATACCATCAAGTGTAAGATATGCTCCACGCAATTTCCTGATGACCAAGCACTCGGTAACCATTGGATGGACAGTCATAAAAAGGAAGCACAATGGCTGTTTAGAGGCTATGCGTGCGCCATTTGTCTGGATTCTTTTACTAACAAGAAATTACTGGAAACTCATGTTCAGGAAAGACATCATGTGCAGTTTGTCGAACAATGCATGCTTCTCCAATGCATTCCTTGTGGGAGTCATTTTGGACATAGTGAGCAATTATGGCAGCATGTTTTATCAGCTCATCAGGTTGATTTTAAGCCATCAAAATCTCCTGAGCAGCAAACTTTCTCTACTGGTGAAGGTTCGGCAGTAAAACATGACCAGGGAAATTCTACCTCTTCAAAAAATAATTCCGAGAATCCAGGTGGGTCACGGAGGTTAGTTTGCAGGTTTTGTGGGTTGAAATTTGATTTACTACCTGACCTAGGCAGACATCACCAAGCTGCTCATATGGGGCCCAATCTAGTTAGCAACCGTCCTGCTAAGAGGGGAGTTCGCTATTATGCATATAAATTAAAATCTGGCAGACTAAGCCGCCCTAGATTTAAGAAAGGTTTGGCTGCAGCAGCATCATTGAGGATGAGAAATAAAGCTAATGCCAATTTAAAACGATGCATTCAGGCCACAAAGTCAATTGGCGTGGAAGGAACAGCCGTACAACCTCACGTAACAGAAACAGATATCAGTGGATTGACAAAGAATCAATGCTCAGCTGTTGCCAAAATTTTGTTTTCAGAAATTCAGAAAACAAAACCTCGGCCTAATAATCTTGATATTTTATCAGTTGCTCGCTTTGCTTGCTGCAAAGTTAATCTTGTAGCCTCTCTGGAAGAGAAATTCGGAGTTCTACCTGAAAAGCTATATTTAAAGGCTGCAAAACTTTGCAGCGATAATAATGTTGTTGCGAAATGGCACCATGAGGGGTTTGTTTGTCCCAGAGGTTGTAACTCGTTGAAGGGTCAAGCGTTGCAGTCTCCTTTAGCATCTCTTCCTAATGGTTTTGGAATGCCAAAATCTTCAAATTTGTCTGATCTTGCAAGTGATGAGTGGGAGGTTGATGAGTTTCACTGCATAATCGACTCACAAAGTTTACAATTAGGTTCACGGAAAAGGGCTGTAGTATTGTGTGATGACATTAGCTTTGGGAAGGAGTCAGTTCCTGTTATTTGTGTAGTAGACCAGGAACTTCTACATTCTCTAAATGCGGATGGGTCTAATGAACAAGATATAATCACTTCTAAACCTTGGGAGAGCTTCTCCTATGTTACGAAGCCAATAATTGATCAATCCCTTAGTCTTGATTCAGAGAGTCCGCAATTGGGATGCGCCTGCTCATATTCTACCTGCTGTCCTGAAACATGTGATCATGTATACCTTTTTGGTGATGACTATGTTGATGCAAAAGACATACTTGGGAAACCAATGCGTGGCAGATCCCCATATGATCAGAACGGCCGATTAATATTGGAGGAAGGTTACCTTGTCTATGAATGTAACCGTATGTGCAGATGCAATAAATCCTGTCCAAATAGAGTATTGCAGAATGGAGTACGAGTCAAATTGGAAGTCTTTAAAACGGAGAAAAAGGGATGGGCAGTAAGGGCTGGAGAAACTATTCTACGAGGAACATTTGTTTGCGAGTACATAGGAGAGGTTTTAGATGTGCAGGAGGCACGTAACAGGCGCGAAAGATATGACACAACGAATAGCAGTTATTTCTATGACATCAATGCTCGTGTTAATGATATGAGTAGGTTGATTGAGGAACAAGTCCAATATGTGATTGATGCTACTAAAAATGGAAATGTGTCGAGGTTCATCAATCATAGTTGCTCGCCCAATCTTGTGAGTCACCAAGTTCTCGTAGAGAGCATGGATTGTGAGCGTTCACACATTGGTTTTTATGCAAGTCGAGACATTGGTTTGGGTGAAGAATTGACATATGGTTTTCAGTACGAGCTTATGCCTGGCGAAGGATCTCCTTGTTTGTGTGAATCATCAAAATGTAGGGGACGCCTTCACTAG 4494 0.4123 MEVLPCSGVQYAGESDCPQRNSETTFVYQEEFNCPENSEHAKLVDGQLSESLHMQGIEIDRQGEGTHNVGDLLINSNCQVVDQKDYGGFHDFDEDMINERYLTSENSLSAVDTIESESPNNGREGDLSFSEPKWLEGDESVALWVKWRGKWLAGIRCARADWPLSTLRAKPTHDRKKYFVIFFPHTKIYSWADMLLVRSIDEYPHPVAHKTHQVGLKLVKDLTAARRFIMQKLVVGMLNIVDQFHLNALTETARDVKVWKEFAMEASRCNGYSDFGRLLLKIYNSILGHYITADWLQQSSPSWVERCQSANSAESVELLKEELFDSILWNDVNNLGDSPVQPILGSEWRTWKHDVAKWFSPSSPVSSSKDTPTRQISDDSYLTNLQASRKRPKLEVRRADTHASKVEFKGSDHTISLVNDTGFFNNQDTLSALTAETLKHENNRKVSITNDLSSNLTNKWNEIVVEAADSDFLYTKENELTPINEMAIVKSVDPGSKNRQCIAFIETKGRQCVRWANEGDVYCCVHLSSRFLAGSANAETPGQTDTPMCDGTTVVGTKCKHRSLPGSLYCKKHRPYAETEQNSSLAQNTMKRKHEENYTGSENMICKDMVLVNAETALQVVPVPSIAGDSLHGEMILYEKPMHSEKGHVMEAPICIGSPPFDNTNPCREFPKRYSLYCEIHLPSWLKRARNGKSRIVSKEVFSELLRGCSSWQQKVHLHEACELFYRLFKSILSLRNQVPKDVQFQWALTEASKETGVGEFFTKLVQSEKERIKSMWGFNDDMDVPSVVEEQQQPLLLMPPPVNHSFDNENTIKCKICSTQFPDDQALGNHWMDSHKKEAQWLFRGYACAICLDSFTNKKLLETHVQERHHVQFVEQCMLLQCIPCGSHFGHSEQLWQHVLSAHQVDFKPSKSPEQQTFSTGEGSAVKHDQGNSTSSKNNSENPGGSRRLVCRFCGLKFDLLPDLGRHHQAAHMGPNLVSNRPAKRGVRYYAYKLKSGRLSRPRFKKGLAAAASLRMRNKANANLKRCIQATKSIGVEGTAVQPHVTETDISGLTKNQCSAVAKILFSEIQKTKPRPNNLDILSVARFACCKVNLVASLEEKFGVLPEKLYLKAAKLCSDNNVVAKWHHEGFVCPRGCNSLKGQALQSPLASLPNGFGMPKSSNLSDLASDEWEVDEFHCIIDSQSLQLGSRKRAVVLCDDISFGKESVPVICVVDQELLHSLNADGSNEQDIITSKPWESFSYVTKPIIDQSLSLDSESPQLGCACSYSTCCPETCDHVYLFGDDYVDAKDILGKPMRGRSPYDQNGRLILEEGYLVYECNRMCRCNKSCPNRVLQNGVRVKLEVFKTEKKGWAVRAGETILRGTFVCEYIGEVLDVQEARNRRERYDTTNSSYFYDINARVNDMSRLIEEQVQYVIDATKNGNVSRFINHSCSPNLVSHQVLVESMDCERSHIGFYASRDIGLGEELTYGFQYELMPGEGSPCLCESSKCRGRLH 1497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g00965 1497 SUPERFAMILY SET domain 1193 1487 IPR046341 -
Trre10g00965 1497 ProSiteProfiles Zinc finger C2H2 type domain profile. 950 978 IPR013087 -
Trre10g00965 1497 ProSitePatterns Zinc finger C2H2 type domain signature. 952 973 IPR013087 -
Trre10g00965 1497 ProSiteProfiles Zinc finger C2H2 type domain profile. 847 870 IPR013087 -
Trre10g00965 1497 ProSiteProfiles Post-SET domain profile. 1481 1497 IPR003616 -
Trre10g00965 1497 SMART c2h2final6 813 836 IPR013087 -
Trre10g00965 1497 SMART c2h2final6 847 870 IPR013087 -
Trre10g00965 1497 SMART c2h2final6 950 973 IPR013087 -
Trre10g00965 1497 SMART c2h2final6 881 904 IPR013087 -
Trre10g00965 1497 SMART set_7 1342 1480 IPR001214 GO:0005515
Trre10g00965 1497 ProSiteProfiles Pre-SET domain profile. 1263 1339 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Trre10g00965 1497 Gene3D SET domain 1180 1478 IPR046341 -
Trre10g00965 1497 Pfam Zinc finger C2H2-type, 3 repeats 849 974 IPR040689 -
Trre10g00965 1497 ProSitePatterns Zinc finger C2H2 type domain signature. 883 904 IPR013087 -
Trre10g00965 1497 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR5 1 1497 - -
Trre10g00965 1497 MobiDBLite consensus disorder prediction 910 945 - -
Trre10g00965 1497 Pfam Pre-SET motif 1202 1334 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Trre10g00965 1497 SMART preset_2 1199 1326 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Trre10g00965 1497 Pfam SET domain 1353 1471 IPR001214 GO:0005515
Trre10g00965 1497 ProSiteProfiles SET domain profile. 1342 1474 IPR001214 GO:0005515
Trre10g00965 1497 Gene3D Classic Zinc Finger 807 879 - -
Trre10g00965 1497 ProSitePatterns Zinc finger C2H2 type domain signature. 815 836 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g00965 Trre-Chr10 7613948 7621101 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g00965 109 1496 C2H2 Transcription Factor Family AT2G23740 51.244 0.0 1374
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Trre10g00965 Pre-SET 1.6e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g00965 - - gmx:100786757 2329.29