Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g00924 ATGTCGTTTTCTTTGTTCTCCACTCCTCAACAACCGCAACAACAACAATCAAACCCATTTCAACCACAACAACAGCAATCTCCTTTTCAGCAGCAGAGTAATTTGTTCCAGCAACAACAACAGCAACAATTCCAACAACAACAACAATTTCAAGCGCAACAACAACAGCAACAGCAACAGCAGCAGCAACAATTGTTTTTGTTCACTAATGATAAAACTCCGGCGAGTTACAGCACCAATTGGGCGGATCTACATCCTGATTCACAGAAATTTCTACTTCAGATCGAGGAACGGATATTGGAGTATAGAGATGAAAGTCAGAGACTTGATCAGTGTAATCGTCTTTATGATTCGTCTGTTTCCAACGATGGATTTGAAGTTGACGCAAGCCATATTGTTCAGGAACTTGGTGGAATCGGCACTGCTATGGAACGACAGAAAACTTTACTACAGGAACTGATGTCAGCTGTTAAGGATATGTTACGTAATACAGAGGTTGCTGTTCGTTCCTTTATGATGCTACGTCCAAGGTTTCATCCCAGTGGGGGAGCATCAAGTGCCACTGCCCCATCACAGACCCCAGGAGCCACAGCACCTAGTTCGAGCGTCCAACCAACATCTACATCTATAGTGCCTGTTTTTGATTTCTACAGTGGTCTTCCAAAGAAACCATCACCCTTTTTGCAACAAACAGTTCTTAGATTTGAGAAATATCTTTGTGAATGTCATCAGTGGATTCAAGAGTTAGAGCAGCTGCTTTTCTTAGACTCTGAAAAAAACGGTTCCAGTAATGGATCCTCGTTATTGCAATCTCTTCCGAAAATCATGACAAATGTGCATGACTTTTTTGTTCACGTGGCTGCAAAGGTGGAGAGCATCCACCAGTACATGGAATCTATGAAATCAGCATACCTAGCTGATCAGCGCCGCCACGGGGAGGTGAATGATCCATTTCTAGAGGCTGATCGTCGAGAAACTGCACGGCAAGAAGCAGCATCAAAAAGAGTTCATCCAACATTGCATTTACCTGCAAATTCACAACCCTCAACTCAAGTTGCTGGGTTGTTTTCCAGTTCAGGAACTCAAGGAGCATTGACTTCCCAACAGACCACTGCAACAACTTCATCTTTGTCAACAGGAAGTGGTTTATCTCTTTTTAGCACACCGACTTCTGCCCCATCATCATCATCTATGCCATCTTTGTTTACAACACCAACAACTCCTGCTCCAGGAAACTCATGGTTTGCATCATCTAGTTCTACGCCTCAACCACAATCCTCAATTTTTGCTTCTGCATCATCTTCCTTACCTGGTGCGACATCAACTCCCTCTCTGTTTGGTAATAATACTCCATTGTTTAATTCAACTCCAGCTGCAAGCTCACTCTTTTCAACTCCGTTTGCTTCAGGTGCTGCAACAGGATCAGGAGCAAGCTTTGGGGGATCTAAAAATCCACGGCCAAAATCTAGAACTGCTCGGCGCTAA 1485 0.4357 MSFSLFSTPQQPQQQQSNPFQPQQQQSPFQQQSNLFQQQQQQQFQQQQQFQAQQQQQQQQQQQQLFLFTNDKTPASYSTNWADLHPDSQKFLLQIEERILEYRDESQRLDQCNRLYDSSVSNDGFEVDASHIVQELGGIGTAMERQKTLLQELMSAVKDMLRNTEVAVRSFMMLRPRFHPSGGASSATAPSQTPGATAPSSSVQPTSTSIVPVFDFYSGLPKKPSPFLQQTVLRFEKYLCECHQWIQELEQLLFLDSEKNGSSNGSSLLQSLPKIMTNVHDFFVHVAAKVESIHQYMESMKSAYLADQRRHGEVNDPFLEADRRETARQEAASKRVHPTLHLPANSQPSTQVAGLFSSSGTQGALTSQQTTATTSSLSTGSGLSLFSTPTSAPSSSSMPSLFTTPTTPAPGNSWFASSSSTPQPQSSIFASASSSLPGATSTPSLFGNNTPLFNSTPAASSLFSTPFASGAATGSGASFGGSKNPRPKSRTARR 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g00924 494 Coils Coil 143 163 - -
Trre10g00924 494 MobiDBLite consensus disorder prediction 340 421 - -
Trre10g00924 494 MobiDBLite consensus disorder prediction 1 38 - -
Trre10g00924 494 MobiDBLite consensus disorder prediction 464 485 - -
Trre10g00924 494 MobiDBLite consensus disorder prediction 184 206 - -
Trre10g00924 494 MobiDBLite consensus disorder prediction 182 206 - -
Trre10g00924 494 MobiDBLite consensus disorder prediction 323 421 - -
Trre10g00924 494 Gene3D - 223 313 - -
Trre10g00924 494 PANTHER NUCLEOPORIN P58/P45 NUCLEOPORIN-LIKE PROTEIN 1 5 482 IPR024882 GO:0005643|GO:0006913|GO:0008139|GO:0017056
Trre10g00924 494 MobiDBLite consensus disorder prediction 464 494 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g00924 Trre-Chr10 7339088 7343933 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g00924 15 494 NAC Transcription Factor Family AT4G37130 59.417 2.31e-175 501
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g00924 K14307 - gmx:100776992 600.897