Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g00899 ATGAATCCTCCTCCGCCTTCTATGGCTACCGGAGCAACCATTGATATGCCGATCATGCACGAGAGTGACCGTTATGATTTCGTTCGTGATATTGGATCAGGGAATTTTGGTGTTGCTAGACTCATGAGAGATAAACATACTAAAGAGCTTGTTGCTGTTAAGTATATTGAACGTGGTGATAAGATTGATGAAAATGTTAAGAGAGAAATAATCAATCACAGGTCTCTAAGACATCCTAATATTGTCAGGTTTAAGGAGGTAATTTTGACCCCGACTCATTTGGCCATTGTAATGGAATATGCATCTGGAGGAGAAATGTTTGAACGAATCAGCAAAGCAGGACGTTTTACCGAGGATGAGGCTCGTTTCTTCTTTCAACAACTAATATCTGGGGTCAGCTATTGTCATTCAATGCAAATATGTCATCGGGACCTGAAATTGGAAAACACTTTGTTGGATGGAGACCCAGCACTTCATTTGAAGATTTGTGATTTTGGATACTCCAAGTCTTCGGTGCTTCATTCGCAACCAAAGTCAACTGTCGGAACTCCAGCATATATTGCTCCAGAAGTACTACTGAAGCAAGAGTATGATGGAAAGATTGCAGATGTATGGTCATGTGGAGTAACCTTATACGTGATGCTAGTGGGATCATATCCCTTTGAAGATCCTGTTAATCCGAAGGATTTCCGGAAGACAATTCAGAGGGTTCTCAGTGTCCAGTATTCCGTTCCAGACTTTGTTCAAATATCTCCTGAATGTCGCGACATTATATCAAGAATCTTTGTTTTTGACCCTGCAGAGAGAATCACCATTCCAGAAATAATGAAAAATGAATGGTTTTGGAAGAATCTTCCTGCTGACTTGGTGAATGAAAAGGTATTCGATAACCAATTTGAAGAACCAGATCAGCCGACGCAGAGCATGGATACGATCATGCAGATAATTTCAGAGGCTACCGTACCAGCAGCTGGGAGCTATTCTTTAGACCAGTTTATGTCTGATAACCTCGACGTGGATGATGATATGGATGATATAGACTCTGATTATGAACTTGATGTAGATAGCAGTGGGGAGATTGTATATGCCATATAA 1095 0.4073 MNPPPPSMATGATIDMPIMHESDRYDFVRDIGSGNFGVARLMRDKHTKELVAVKYIERGDKIDENVKREIINHRSLRHPNIVRFKEVILTPTHLAIVMEYASGGEMFERISKAGRFTEDEARFFFQQLISGVSYCHSMQICHRDLKLENTLLDGDPALHLKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLLKQEYDGKIADVWSCGVTLYVMLVGSYPFEDPVNPKDFRKTIQRVLSVQYSVPDFVQISPECRDIISRIFVFDPAERITIPEIMKNEWFWKNLPADLVNEKVFDNQFEEPDQPTQSMDTIMQIISEATVPAAGSYSLDQFMSDNLDVDDDMDDIDSDYELDVDSSGEIVYAI 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g00899 364 ProSiteProfiles Protein kinase domain profile. 25 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g00899 364 FunFam Serine/threonine-protein kinase SRK2E 101 289 - -
Trre10g00899 364 SUPERFAMILY Protein kinase-like (PK-like) 12 324 IPR011009 -
Trre10g00899 364 SMART serkin_6 25 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g00899 364 ProSitePatterns Protein kinases ATP-binding region signature. 31 54 IPR017441 GO:0005524
Trre10g00899 364 PANTHER SERINE/THREONINE KINASE 24 307 - -
Trre10g00899 364 Pfam Protein kinase domain 25 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g00899 364 ProSitePatterns Serine/Threonine protein kinases active-site signature. 140 152 IPR008271 GO:0004672|GO:0006468
Trre10g00899 364 FunFam Serine/threonine-protein kinase SRK2E 16 100 - -
Trre10g00899 364 Gene3D Transferase(Phosphotransferase) domain 1 101 289 - -
Trre10g00899 364 Gene3D Phosphorylase Kinase; domain 1 6 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g00899 Trre-Chr10 7090637 7094488 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g00899 24 285 CBL-interacting serine-threonine protein kinases AT5G25110 43.636 4.36e-68 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Trre10g00899 Pkinase 1.3e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g00899 K14498 - gmx:100783967 620.542