Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g00897 ATGGAACAACAACTCAACTTAGATTTGACTTTAGCTTTAGCCTCTGTTCCCAAAACCGTTTCTCATTTCCTCAACGACGTCGTTTCTCACACCAATAACTCATCTCAAAAACTTTCAAACCTTGATGACTTACTTCAAAGATTGGAAGAAGAAATGAACAAAGTTCTCGCTTTCAAACGTGAACTTCCTCTTTCCATAATCCTCCTTAACAATGCTATAGAAAGATTGAAGGAGGAAAAAGAAAAAGTTAAGTTAATGAAAATGGAAGATCCAACAAACTGTGGTCATAGTAATAATAACAATAAGAATTGGATGAGTTCTGTTCAGCTTTGGACTAATGAAAAAAATTCGAAGAATGAAGATGGTGAAAGGTGTGTGTCAAAGAAGAGTAATGGTGGAGGGGTATTTATGGAATTTAATGGAAATTCTTTGAAGGAGGTTTCTCAAGTTCCAAGCTATAGTTTGGTGTCTGAAGTGAGTCATGGAAATTCCAAGAGTGGTGGTAGTTCTGGATCGTCTTTGTTGCGCGTTGAGATACAGAATCAGCCGCAGCCGCCACATCCTTTGCAGCAGAATTCGAGGAAACAAAGGCGTAGCTGGTCGTCTGAGCTTCATCGCCGTTTCGTTGATGCACTTCAACAGCTTGGTGGAGCACATGCAGCCACTCCTAAACAAATTAGGGAAAAGATGCAAGTGGATGGATTAACAAATGATGAAGTGAAAAGCCATTTGCAAAAATACAGGCTTCATGTTAGAAGATTCCCAATTTCTTCAATTGAGGAGGCTAATAAACTAGCCTTATATATGACACAAGATCAATGTGGAGATACATCAAAGGGAAACATATCAGAGTCTGTTTCACCACAGGGTCCTCTTACTCCTCTTCTACTTGGAGGATCTGTTAAAGGTGTCTCGAGCCATGGAAGAAATAGTATGGATGCAGACGATGAACAATCAGATTGCAGGAATTGGAAAGGTGATCAGGAGCAGCTACATGAAGCAGAGTAA 1008 0.3978 MEQQLNLDLTLALASVPKTVSHFLNDVVSHTNNSSQKLSNLDDLLQRLEEEMNKVLAFKRELPLSIILLNNAIERLKEEKEKVKLMKMEDPTNCGHSNNNNKNWMSSVQLWTNEKNSKNEDGERCVSKKSNGGGVFMEFNGNSLKEVSQVPSYSLVSEVSHGNSKSGGSSGSSLLRVEIQNQPQPPHPLQQNSRKQRRSWSSELHRRFVDALQQLGGAHAATPKQIREKMQVDGLTNDEVKSHLQKYRLHVRRFPISSIEEANKLALYMTQDQCGDTSKGNISESVSPQGPLTPLLLGGSVKGVSSHGRNSMDADDEQSDCRNWKGDQEQLHEAE 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g00897 335 Coils Coil 66 89 - -
Trre10g00897 335 NCBIfam myb-like DNA-binding domain, SHAQKYF class 195 250 IPR006447 GO:0003677
Trre10g00897 335 SUPERFAMILY Homeodomain-like 193 253 IPR009057 -
Trre10g00897 335 FunFam Myb family transcription factor 194 252 - -
Trre10g00897 335 MobiDBLite consensus disorder prediction 275 290 - -
Trre10g00897 335 Coils Coil 31 61 - -
Trre10g00897 335 MobiDBLite consensus disorder prediction 182 202 - -
Trre10g00897 335 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 192 252 IPR017930 -
Trre10g00897 335 MobiDBLite consensus disorder prediction 275 335 - -
Trre10g00897 335 Gene3D - 194 251 - -
Trre10g00897 335 MobiDBLite consensus disorder prediction 309 335 - -
Trre10g00897 335 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 10 324 IPR044787 GO:0003700|GO:0006355
Trre10g00897 335 MobiDBLite consensus disorder prediction 182 197 - -
Trre10g00897 335 Pfam Myb-like DNA-binding domain 197 248 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g00897 Trre-Chr10 7054124 7056279 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g00897 2 245 G2-like Transcription Factor Family AT4G37180 41.912 3.18e-51 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Trre10g00897 Myb_DNA-binding 3.4e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g00897 - - gmx:100785723 330.487