Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g00896 ATGGAACAACAACTCAACTTAGATTTGACTTTAGCTTTAGCCTCTGTTCCCAAAACCGTTTCTCATTTCCTCAACGACGTCGTTTCTCACACCAATAACTCATCTCAAAAACTTTCAAACCTTGATGACTTACTTCAAAGATTGGAAGAAGAAATGAACAAAGTTCTCGCTTTCAAACGTGAACTTCCTCTTTCCATAATCCTCCTTAACAATGCTATAGAAAGATTGAAGGAGGAAAAAGAAAAAGTTAAGTTAATGAAAATGGAAGATCCAACAAACTGTGGTCATAGTAATAATAACAATAAGAATTGGATGAGTTCTGTTCAGCTTTGGACTAATGAAAAAAATTCGAAGAATGAAGATGGTGAAAGGTGTGTGTCAAAGAAGAGTAATGGTGGAGGGGTATTTATGGAATTTAATGGAAATTCTTTGAAGGAGGTTTCTCAAGTTCCAAGCTATAGTTTGGTGTCTGAAGTGAGTCATGGAAATTCCAAGAGTGGTGGTAGTTCTGGATCGTCTTTGTTGCGCGTTGAGATACAGAATCAGCCGCAGCCGCCACATCCTTTGCAGCAGAATTCGAGGAAACAAAGGCGTAGCTGGTCGTCTGAGCTTCATCGCCGTTTCGTTGATGCACTTCAACAGCTTGGTGGAGCACATGCCACTCCTAAACAAATTAGGGAAAAGATGCAAGTGGATGGATTAACAAATGATGAAGTGAAAAGCCATTTGCAAAAATACAGGCTTCATGTTAGAAGATTCCCAATTTCTTCAATTGAGGAGGCTAATAAACTAGCCTTATATATGACACAAGATCAATGTGGAGATACATCAAAGGGAAACATATCAGAGTCTGTTTCACCACAGGGTCCTCTTACTCCTCTTCTACTTGGAGGATCTGTTAAAGGTGTCTCGAGCCATGGAAGAAATAGTATGGATGCAGACGATGAACAATCAGATTGCAGGAATTGGAAAGGTGATCAGGAGCAGCTACATGAAGCAGAGTAA 1005 0.397 MEQQLNLDLTLALASVPKTVSHFLNDVVSHTNNSSQKLSNLDDLLQRLEEEMNKVLAFKRELPLSIILLNNAIERLKEEKEKVKLMKMEDPTNCGHSNNNNKNWMSSVQLWTNEKNSKNEDGERCVSKKSNGGGVFMEFNGNSLKEVSQVPSYSLVSEVSHGNSKSGGSSGSSLLRVEIQNQPQPPHPLQQNSRKQRRSWSSELHRRFVDALQQLGGAHATPKQIREKMQVDGLTNDEVKSHLQKYRLHVRRFPISSIEEANKLALYMTQDQCGDTSKGNISESVSPQGPLTPLLLGGSVKGVSSHGRNSMDADDEQSDCRNWKGDQEQLHEAE 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g00896 334 Coils Coil 66 89 - -
Trre10g00896 334 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 10 323 IPR044787 GO:0003700|GO:0006355
Trre10g00896 334 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 192 251 IPR017930 -
Trre10g00896 334 NCBIfam myb-like DNA-binding domain, SHAQKYF class 195 249 IPR006447 GO:0003677
Trre10g00896 334 Pfam Myb-like DNA-binding domain 197 247 IPR001005 -
Trre10g00896 334 MobiDBLite consensus disorder prediction 308 334 - -
Trre10g00896 334 Coils Coil 31 61 - -
Trre10g00896 334 MobiDBLite consensus disorder prediction 182 202 - -
Trre10g00896 334 MobiDBLite consensus disorder prediction 274 289 - -
Trre10g00896 334 Gene3D - 192 253 - -
Trre10g00896 334 MobiDBLite consensus disorder prediction 182 197 - -
Trre10g00896 334 FunFam Two-component response regulator 191 253 - -
Trre10g00896 334 SUPERFAMILY Homeodomain-like 193 252 IPR009057 -
Trre10g00896 334 MobiDBLite consensus disorder prediction 274 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g00896 Trre-Chr10 7054124 7056279 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g00896 2 244 G2-like Transcription Factor Family AT4G37180 41.697 2.78e-49 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Trre10g00896 Myb_DNA-binding 2.4e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g00896 - - gmx:100785723 325.865