Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g00892 ATGTCTTCATCATCAAATTCTCCGTGTGCGGCCTGCAAGTTTCTCCGGCGAAAATGCACACAAGAGTGCGTGTTTGCACCGTATTTTCCACCCGACAATCCTCAAAGATTTGCATATGTACACAAAGTTTTCGGCGCGAGTAACGTGGCAAAGCTGTTAAATGAACTTAATGCGACTCAGCGTGATGACGCCGTGAAATCGTTGGCTTATGAGGCTGAGGCGCGGCTTAGAGACCCGGTTTACGGCTGTGTTGGTCTTATTTCACTTCTTCAGCATAAGCTAAGAGCAATTCAAGGTGAACTTAATAATGCTAAAAAGGAACTTGCTACTTATATTGGTCCTCAAGCGCTTCAAGGTTTTCCCACAACGATTCTTCAACAACAGCCGCAACATAATAATCCTTTTGGTGGTAATTCTCTTTACCCTTATAACGGAAACATTCCGGCCGTGACTGCGGCTAACCAGATGGTGATTCGTGATCCGCCGCAACACCCACCGCAGCAGCAGATCTTGGAAGCTCATCAATTGGCTGCTGCTGTTGCTGCTAGAGAGCAACAGGATATTTTTAGGACTTTTGATTCTCAACAGCAACAGCAGGATTTTTTGAGGTTTAGTGGTGGGTTTGATGTGGATTCTGTTTCTAATTCTGCTGGTGGGTTCACTCCAGTTTCTGCTGGTGTTGGTGCTGGTGTTGTTGCTGCTGATCAATTGTCTCCTTCTTTGGCTTTGGGATCTTTTGATAATACTTATCACCACATGCAACAATCACAACAAGGACAAGGAGAATCTCATCCTCATCCTCATCATCAGCAGCAGCATCATAATCATCATCTTCCACTTGAGGCACAGTTATTGCTTCCTCCTCAGCAGAAACAAGCACAGCCACAAACTCAACATTCACCATTGACCCATCATCATCATCATCATCATCACCAACAACAGACGGAAAGCGAGGAGTTTTTCAGCCTAGTTCTTACCTACCGGATACAAATGGATAGAAAAGAAAGAAGAGAAGGGTAA 1020 0.4471 MSSSSNSPCAACKFLRRKCTQECVFAPYFPPDNPQRFAYVHKVFGASNVAKLLNELNATQRDDAVKSLAYEAEARLRDPVYGCVGLISLLQHKLRAIQGELNNAKKELATYIGPQALQGFPTTILQQQPQHNNPFGGNSLYPYNGNIPAVTAANQMVIRDPPQHPPQQQILEAHQLAAAVAAREQQDIFRTFDSQQQQQDFLRFSGGFDVDSVSNSAGGFTPVSAGVGAGVVAADQLSPSLALGSFDNTYHHMQQSQQGQGESHPHPHHQQQHHNHHLPLEAQLLLPPQQKQAQPQTQHSPLTHHHHHHHHQQQTESEEFFSLVLTYRIQMDRKERREG 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g00892 339 Coils Coil 87 107 - -
Trre10g00892 339 Pfam Lateral organ boundaries (LOB) domain 8 105 IPR004883 -
Trre10g00892 339 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 5 296 - -
Trre10g00892 339 MobiDBLite consensus disorder prediction 252 317 - -
Trre10g00892 339 ProSiteProfiles LOB domain profile. 7 108 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g00892 Trre-Chr10 7030964 7033286 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g00892 3 251 AS2 family AT5G66870 50.187 9.04e-70 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trre10g00892 LOB 5.5e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g00892 - - tpra:123910973 489.189