Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g00891 ATGGAGACAAGGCCACCGGGGAATGCGATGGCGCGTCAAGATACAAGTGGTGCTGAAACTCCAAGCTTTCGAGCAAATAGTTTCCGGATAAGTGTCCCTCCAAGGAGTGCTTCAAACAGTCCCTTTACCAGTCCCACAATCAGCCCACACAATACCAGACATGATGACTTTGTGCCATATTATTATGTGTCACCCAAAGCAAATCATTTCTGGTCTGCACCAGAAATGCCAACATCTTCAGGGCAACCTCCTCCTGCTTTCTTTGATTTATCTGCATTAGGCATTGATTGTGCCACTTCTCCCCAACAAAGTTCAGGGGGAAAAAGTCCCAGACAACAAAATCCCAAAAGCCCAACTAGACCTTCTTCACCCCTACCAAGGTTGTCCCTTGACTACCCAACAACTACACGTCGTGAAAGTCTTGCTCCTCTTCTCAGTGTTCATCCTTTACCCTTGCCTCCTTGGCCCGGGACTTCCTTACCTTCACCCTCTGGTGCATATTCTCAACCTGGGGGGGCTAAGACAGAATCCGTATCTATGAAAAGTCAATGGCAAAAGGGTAAACTTATAGGGCGAGGTACCTTTGGAAGTGTTTACGTTGCCACTAATAGAGAAACTGGAGCATTGTGTGCAATGAAGGAAGCAGAAATATTTTTCGATGATCCAAAATCTGCCGAGAGTATAAAGCAGTTAGAACAGGAAATCAAAGTTCTTAGCCAGCTAAAACATCCAAACATTGTGCAGTATTATGGTAGTGAAATAATAGAAGACAAGTTTTATATTTATTTGGAGTTTATCCATCCTGGCTCAATAAATAAATATGTCCGTGACCACTGTGGTGCGGTAACAGAATCCGTTGTTCGGAATTTCACACGACATATTCTTTCGGGGTTGGCTTACTTGCACAGCAAACAGACAATTCACAGGGATATCAAAGGGGCTAACTTGCTTGTTGATTCTTCTGGTGTTGTTAAGCTTGCTGATTTTGGGATGGCCAAGCATCTAACTGGCCATTCTGCTGATCTATCTTTGAAAGGAAGTCCATATTGGATGGCTCCAGAGCTAATGCAAGCAGTCATACATAAAGATAACAACTCTGATCTAGCTTTTGCTATTGATATTTGGAGTTTGGGTTGCACAATCATTGAAATGTTCACTGGGAAGCCTCCATGGAGTGAATACGAAGGAGCTGCAGCTATGTTTAAGGTAATGAAGGATACCCCTGCTATACCTGAAACATTGTCACCAGAAGGTAAAGATTTCTTGAGGCTTTGCTTTAAAAGAAATCCAGCAGAGCGGCCAACTGCTACAATGTTATTAGAGCATCGGTTTCTGAAAAACTTACAACATTCAGATCCTTCACCCTCCTCCCATTTGTATAATGGAACAAGCTTAATGGATAAACCCCATAGTCCCAGAGGGTTATTAGAAAACAAACCTGATCAGTTTTCTATTGTCAGTGCACAGATTGCAAAAGGGAAATCTTCCATTGAGAGTGGCATGACAATGTCCTACTCGCTCTACTCTTGA 1530 0.4307 METRPPGNAMARQDTSGAETPSFRANSFRISVPPRSASNSPFTSPTISPHNTRHDDFVPYYYVSPKANHFWSAPEMPTSSGQPPPAFFDLSALGIDCATSPQQSSGGKSPRQQNPKSPTRPSSPLPRLSLDYPTTTRRESLAPLLSVHPLPLPPWPGTSLPSPSGAYSQPGGAKTESVSMKSQWQKGKLIGRGTFGSVYVATNRETGALCAMKEAEIFFDDPKSAESIKQLEQEIKVLSQLKHPNIVQYYGSEIIEDKFYIYLEFIHPGSINKYVRDHCGAVTESVVRNFTRHILSGLAYLHSKQTIHRDIKGANLLVDSSGVVKLADFGMAKHLTGHSADLSLKGSPYWMAPELMQAVIHKDNNSDLAFAIDIWSLGCTIIEMFTGKPPWSEYEGAAAMFKVMKDTPAIPETLSPEGKDFLRLCFKRNPAERPTATMLLEHRFLKNLQHSDPSPSSHLYNGTSLMDKPHSPRGLLENKPDQFSIVSAQIAKGKSSIESGMTMSYSLYS 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g00891 509 Gene3D Transferase(Phosphotransferase) domain 1 180 469 - -
Trre10g00891 509 MobiDBLite consensus disorder prediction 97 116 - -
Trre10g00891 509 SMART serkin_6 184 445 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g00891 509 MobiDBLite consensus disorder prediction 1 53 - -
Trre10g00891 509 MobiDBLite consensus disorder prediction 450 464 - -
Trre10g00891 509 SUPERFAMILY Protein kinase-like (PK-like) 179 472 IPR011009 -
Trre10g00891 509 FunFam Mitogen-activated protein kinase kinase kinase 5 181 482 - -
Trre10g00891 509 ProSiteProfiles Protein kinase domain profile. 184 445 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g00891 509 ProSitePatterns Protein kinases ATP-binding region signature. 190 213 IPR017441 GO:0005524
Trre10g00891 509 Pfam Protein kinase domain 185 445 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g00891 509 MobiDBLite consensus disorder prediction 9 51 - -
Trre10g00891 509 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 77 457 - -
Trre10g00891 509 MobiDBLite consensus disorder prediction 450 478 - -
Trre10g00891 509 MobiDBLite consensus disorder prediction 97 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g00891 Trre-Chr10 6995941 6999409 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g00891 9 502 MAP Kinase Kinase Kinase AT5G66850 60.952 0.0 590
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Trre10g00891 Pkinase 1.1e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g00891 - - psat:127120353 880.937