Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g00890 ATGCGTTGGTTGCCAACCTTAATTTTCTCTCCTTCTTCTTCCTCTTCCTCTTCTGCTTCTCATTCTCATTCTTCAATCGCTTCTTCATCTTCCTCCGCTACATCTCCTTCAACGGTTAAATCACCTCCTCCTTCTTCTACCTCCGATACCTCCGAACGAAGAAAAAGTACAGGCAGCACGTGGTTTTTTGGTGCTGGTAAAAGATCGACGCGATCAAGGAAGCTACGCCATGTCGATGATGATCATGTGGAATACGGCGTCGTTACGACAGCAGCGCCGATTACTCGTTCTCCGAGTGCACGGAGCTATATTCGGTCTAATACTTCTGTTGCGCCTCAGCCGTTGCCATTGCCGGAGTTAGCGTTAGCGTCTTCTGTTGTGAGACCTAGAGATGCTGATTGTCGTTTGCCGTCGCCTAAAGAAGCTTCCGGTAGAGCCGAACCTGATGTCAATGTCGTTATCGGTTCTCTTTCTACTGGATTTAAGATGCGCAGTGTTTTTGCTAGCCAAGATAAAAGAAGGAATACAGAGCATATGGAGACAAGGCCACCGGGGAATGCGATGGCGCGTCAAGATACAAGTGGTGCTGAAACTCCAAGCTTTCGAGCAAATAGTTTCCGGATAAGTGTCCCTCCAAGGAGTGCTTCAAACAGTCCCTTTACCAGTCCCACAATCAGCCCACACAATACCAGACATGATGACTTTGTGCCATATTATTATGTGTCACCCAAAGCAAATCATTTCTGGTCTGCACCAGAAATGCCAACATCTTCAGGGCAACCTCCTCCTGCTTTCTTTGATTTATCTGCATTAGGCATTGATTGTGCCACTTCTCCCCAACAAAGTTCAGGGGGAAAAAGTCCCAGACAACAAAATCCCAAAAGCCCAACTAGACCTTCTTCACCCCTACCAAGGTTGTCCCTTGACTACCCAACAACTACACGTCGTGAAAGTCTTGCTCCTCTTCTCAGTGTTCATCCTTTACCCTTGCCTCCTTGGCCCGGGACTTCCTTACCTTCACCCTCTGGTGCATATTCTCAACCTGGGGGGGCTAAGACAGAATCCGTATCTATGAAAAGTCAATGGCAAAAGGGTAAACTTATAGGGCGAGGTACCTTTGGAAGTGTTTACGTTGCCACTAATAGAGAAACTGGAGCATTGTGTGCAATGAAGGAAGCAGAAATATTTTTCGATGATCCAAAATCTGCCGAGAGTATAAAGCAGTTAGAACAGGAAATCAAAGTTCTTAGCCAGCTAAAACATCCAAACATTGTGCAGTATTATGGTAGTGAAATAATAGAAGACAAGTTTTATATTTATTTGGAGTTTATCCATCCTGGCTCAATAAATAAATATGTCCGTGACCACTGTGGTGCGGTAACAGAATCCGTTGTTCGGAATTTCACACGACATATTCTTTCGGGGTTGGCTTACTTGCACAGCAAACAGACAATTCACAGGGATATCAAAGGGGCTAACTTGCTTGTTGATTCTTCTGGTGTTGTTAAGCTTGCTGATTTTGGGATGGCCAAGCATCTAACTGGCCATTCTGCTGATCTATCTTTGAAAGGAAGTCCATATTGGATGGCTCCAGAGCTAATGCAAGCAGTCATACATAAAGATAACAACTCTGATCTAGCTTTTGCTATTGATATTTGGAGTTTGGGTTGCACAATCATTGAAATGTTCACTGGGAAGCCTCCATGGAGTGAATACGAAGGAGCTGCAGCTATGTTTAAGGTAATGAAGGATACCCCTGCTATACCTGAAACATTGTCACCAGAAGGTAAAGATTTCTTGAGGCTTTGCTTTAAAAGAAATCCAGCAGAGCGGCCAACTGCTACAATGTTATTAGAGCATCGGTTTCTGAAAAACTTACAACATTCAGATCCTTCACCCTCCTCCCATTTGTATAATGGAACAAGCTTAATGGATAAACCCCATAGTCCCAGAGGGTTATTAGAAAACAAACCTGATCAGTTTTCTATTGTCAGTGCACAGATTGCAAAAGGGAAATCTTCCATTGAGAGTGGCATGACAATGTCCTACTCGCTCTACTCTTGA 2064 0.4419 MRWLPTLIFSPSSSSSSSASHSHSSIASSSSSATSPSTVKSPPPSSTSDTSERRKSTGSTWFFGAGKRSTRSRKLRHVDDDHVEYGVVTTAAPITRSPSARSYIRSNTSVAPQPLPLPELALASSVVRPRDADCRLPSPKEASGRAEPDVNVVIGSLSTGFKMRSVFASQDKRRNTEHMETRPPGNAMARQDTSGAETPSFRANSFRISVPPRSASNSPFTSPTISPHNTRHDDFVPYYYVSPKANHFWSAPEMPTSSGQPPPAFFDLSALGIDCATSPQQSSGGKSPRQQNPKSPTRPSSPLPRLSLDYPTTTRRESLAPLLSVHPLPLPPWPGTSLPSPSGAYSQPGGAKTESVSMKSQWQKGKLIGRGTFGSVYVATNRETGALCAMKEAEIFFDDPKSAESIKQLEQEIKVLSQLKHPNIVQYYGSEIIEDKFYIYLEFIHPGSINKYVRDHCGAVTESVVRNFTRHILSGLAYLHSKQTIHRDIKGANLLVDSSGVVKLADFGMAKHLTGHSADLSLKGSPYWMAPELMQAVIHKDNNSDLAFAIDIWSLGCTIIEMFTGKPPWSEYEGAAAMFKVMKDTPAIPETLSPEGKDFLRLCFKRNPAERPTATMLLEHRFLKNLQHSDPSPSSHLYNGTSLMDKPHSPRGLLENKPDQFSIVSAQIAKGKSSIESGMTMSYSLYS 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g00890 687 SUPERFAMILY Protein kinase-like (PK-like) 357 650 IPR011009 -
Trre10g00890 687 MobiDBLite consensus disorder prediction 209 228 - -
Trre10g00890 687 ProSitePatterns Protein kinases ATP-binding region signature. 368 391 IPR017441 GO:0005524
Trre10g00890 687 SMART serkin_6 362 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g00890 687 Gene3D Transferase(Phosphotransferase) domain 1 358 646 - -
Trre10g00890 687 ProSiteProfiles Protein kinase domain profile. 362 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g00890 687 MobiDBLite consensus disorder prediction 275 309 - -
Trre10g00890 687 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 15 635 - -
Trre10g00890 687 MobiDBLite consensus disorder prediction 172 199 - -
Trre10g00890 687 MobiDBLite consensus disorder prediction 628 656 - -
Trre10g00890 687 MobiDBLite consensus disorder prediction 275 294 - -
Trre10g00890 687 FunFam Mitogen-activated protein kinase kinase kinase 5 359 660 - -
Trre10g00890 687 MobiDBLite consensus disorder prediction 628 642 - -
Trre10g00890 687 MobiDBLite consensus disorder prediction 7 66 - -
Trre10g00890 687 Pfam Protein kinase domain 363 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g00890 687 MobiDBLite consensus disorder prediction 1 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g00890 Trre-Chr10 6995941 7003201 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g00890 1 680 MAP Kinase Kinase Kinase AT5G66850 52.933 0.0 604
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Trre10g00890 Pkinase 2.2e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g00890 - - psat:127120353 1049.27