LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre10g00884	ATGGGTATTTGCACTTCAAAATCCACACACTCCTCTCGCAACCTTCAACTTCCTCCATCCAACTCCGTTACAGTTAACGCCACTTCTGAACCTCAAACTAACTCCGTTAATGGCGAAAACGAAAACGAAAACCCTAAGGCTAATACTGAAGAAAATGTTAAGAGATCTCCGTTTTTTCCGTTCTACAGTCCGAGTCCAGCTCATCAATTTCTCTCAAAGATGTCACCGGCGAGGAAATTTTTTAAGAAACCGTTTCCTCCACCGTCTCCGGCGAAGCATATAAGATCGCTTCTAGCACGGCGGCATGGTTCGGTTAAGCCTAATGAAGCTTCGATACCAGAGGGTGGTGAAGAGGAGACTGTGTCTGTGGCTGCTCTTGATAAGAATTTTGGATTTTCCAAGCATTTTGGAAGTAAATATGATGTTGGTGATGAAGTTGGGAGAGGACATTTTGGATATACTTGTGCTGCTAGGGTGAAGAAAGGTGATCTTAAAGGTCAACAAGTTGCTGTCAAAGTGATTCCTAAAGCCAAGATGACTACTGCTATTGCTATTGAGGATGTGAGAAGGGAAGTGAAAATATTGAGAGCTTTGAATGGACATAAGAATTTAGTACGATTCTATGAGGCTTATGAAGATAATGCTAATGTCTACATAGTAATGGAATTGTGTGAAGGTGGAGAGCTGTTGGATAGAATATTATCAAGAGGCGGGAAATACACAGAGGAAGATGCAAAAGCTATCCTGAGACAAATACTAAATGCTGCTGCATTTTGCCATCTACAGGGTGTTGTACATCGTGATCTTAAACCGGAGAACTTCTTGTTCGCATCCGCAGATGAAAACTCAGAACTGAAGGCCATAGACTTTGGGTTGTCAGATTTTGTTAAACTAGATGAAAGGCTCAATGATATTGTGGGTAGTGCATACTATGTGGCTCCTGAAGTTCTACATAGAGCTTATAGTACCGAGGCCGATGTTTGGAGTATTGGAGTGATTGCATATATTTTATTATGTGGCAGCCGTCCCTTTTGGGCTCGGACTGAGTCTGGCATCTTTCGTACTGTATTGAAAGCAGATCCAAGTTTTGACGAACCTCCTTGGCCTTCTCTATCAGACGAGGCAAGGGATTTTGTTAAGCGATTACTAAATAAAGATCCAAGGAAAAGAATGAGTGCAGCACAGGCATTAAGTCATCCATGGATTAAAAACTACGAGGATGTGGAATTGCCTTTGGATATTTTGGTATTCAAGCTCCTGAAGACATACATGCGTTCTTCATCTCTAAGAAGAGCTGCTTTAAGGGCTCTGTCTAAGACATTAACTGAGGATGATCTCGTTTATTTGAAGGAGCAATTTGCACTCTTGAAGCCTAACAAAAATGGCACCATTAGCTTAGAAAATATACAAGCGGCCTTTACGGTAAATGCAACAGATGCTATGAAGGAGTCACGCATTGCCGACTTTCTGGCATCACTTAATGCATTGCAATATAGAAGGATGGGTTTTGACGAGTTCTGCGCAGCTACACTTAGTGTTCATCAACTTGAAGCACTTGACCACTGGGAAAAGCGTGCACGTTTTGCCTTTGACCTGTTTGAAAAGGATGGAAACAAGGCCATAGTCATTGACGAATTAGCTTCGGAACTTGGGCTTGGTCCATCTATCCCTGTACATGCTGTTCTTCATGATTGGATTCGGCACACTGATGGGAAGTTAAGCTTCCTTGGATTTGTGAAATTGTTGCATGGCCCATCAAGAAGTCTTGCAAAAGCTCAATAG	1782	0.4214	MGICTSKSTHSSRNLQLPPSNSVTVNATSEPQTNSVNGENENENPKANTEENVKRSPFFPFYSPSPAHQFLSKMSPARKFFKKPFPPPSPAKHIRSLLARRHGSVKPNEASIPEGGEEETVSVAALDKNFGFSKHFGSKYDVGDEVGRGHFGYTCAARVKKGDLKGQQVAVKVIPKAKMTTAIAIEDVRREVKILRALNGHKNLVRFYEAYEDNANVYIVMELCEGGELLDRILSRGGKYTEEDAKAILRQILNAAAFCHLQGVVHRDLKPENFLFASADENSELKAIDFGLSDFVKLDERLNDIVGSAYYVAPEVLHRAYSTEADVWSIGVIAYILLCGSRPFWARTESGIFRTVLKADPSFDEPPWPSLSDEARDFVKRLLNKDPRKRMSAAQALSHPWIKNYEDVELPLDILVFKLLKTYMRSSSLRRAALRALSKTLTEDDLVYLKEQFALLKPNKNGTISLENIQAAFTVNATDAMKESRIADFLASLNALQYRRMGFDEFCAATLSVHQLEALDHWEKRARFAFDLFEKDGNKAIVIDELASELGLGPSIPVHAVLHDWIRHTDGKLSFLGFVKLLHGPSRSLAKAQ	593

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre10g00884	593	FunFam	CDPK-related kinase 1	438	511	-	-
	Trre10g00884	593	FunFam	Calcium-dependent protein kinase SK5	312	407	-	-
	Trre10g00884	593	MobiDBLite	consensus disorder prediction	1	43	-	-
	Trre10g00884	593	Pfam	Protein kinase domain	140	402	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre10g00884	593	FunFam	CDPK-related kinase 1	133	228	-	-
	Trre10g00884	593	ProSitePatterns	Protein kinases ATP-binding region signature.	146	172	IPR017441	GO:0005524
	Trre10g00884	593	Gene3D	Transferase(Phosphotransferase) domain 1	230	419	-	-
	Trre10g00884	593	FunFam	CDPK-related kinase 3	132	304	-	-
	Trre10g00884	593	SMART	serkin_6	140	402	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre10g00884	593	Gene3D	-	421	584	-	-
	Trre10g00884	593	Gene3D	Phosphorylase Kinase; domain 1	133	229	-	-
	Trre10g00884	593	ProSiteProfiles	Protein kinase domain profile.	140	402	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre10g00884	593	SUPERFAMILY	Protein kinase-like (PK-like)	137	430	IPR011009	-
	Trre10g00884	593	CDD	STKc_CAMK	139	401	-	-
	Trre10g00884	593	PANTHER	SERINE/THREONINE-PROTEIN KINASE	125	568	-	-
	Trre10g00884	593	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	264	276	IPR008271	GO:0004672\|GO:0006468
	Trre10g00884	593	MobiDBLite	consensus disorder prediction	1	55	-	-
	Trre10g00884	593	SUPERFAMILY	EF-hand	430	584	IPR011992	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre10g00884	Trre-Chr10	6924528	6929339	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre10g00884	1	593	EF-hand Containing Proteins	AT3G50530	70.487	0.0	902

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CAMK_CDPK	Trre10g00884		Pkinase	3.3e-71	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre10g00884	K00924		-	gmx:100815721	919.072