Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g00869 ATGAATTGGGTTCGTGGTCACACCCTAGGTAGTGGAAGTTTTGCCACCGTCCATTTAGCCAAACACACAAAAGACTTTGGTAACTTTCCCTCTCTCAGTGCCGTCAAATCATGCAATCTTGACAATTGTTTTTCTCTCCAAAACGAAAAACATATACTTGATCAGTTAGGATCATCCCCACATATTATCAAATGTTTTGGTCACGACCAAACTTTTGAAAACGGTCAAGAGTATTATAATATTTTTCTGGAATACGCTGCCGGTGGAACTCTCAACGATCAACTCTATAATTACGGTGGTAAGTTCCCGGAGAAACTTGTCCGCCATTACACAAGGTCTATTGTTGAAGGACTCAAGTACATTCATGAAAACGGTTTTGTTCACTGCGACTTGAAGTTACCAAACATTCTCGTGTTCGACAATGACAACATTAAGATTTCAGATTTTGGTCTTGCGAAAGAGAAAGGGATAGTTGATAAGCAGCAATGTAGGGGAACTCCAATGTATATGTCGCCAGAAGCGATAAATGACAATGTGCATGAGTCGCCAGCAGATATATGGGCTCTTGGTTGTGTCGTCGTGGAGATGATTACTGGAGAACCCGTGTGGAAGAATGAAACAGATATGTGGATGTTGTTCACTCGAATTGTGATAAGGGAAGAACAACCATTTATTCCGGATGAATTATCACAACAAGGGAAAGATTTTCTTGACAAGTGTTTTGCTAGGGATCCTTTGAAAAGATGGAGTGCAGATATGCTTTTGAAACACCCTTTTATCTCTGAAGATGAAACTGTTTCGTCGTTGAAGGTGTTTACTAATGAGTTGTTGTTGTCATCATCATCATCTCCAAAAACTCACTTTGATTACCCTCGTTGGGCTTCCTCCACTATTACGACTTTGTGTACTAGTTCAGAAGAATGGATTGGCATGGAATTCAAGCATTGTTTTTGTTCGCAGGAGATGACATTTCATCATCTAGTCACAGATCAGATGCCGTTAAATTGA 1008 0.4008 MNWVRGHTLGSGSFATVHLAKHTKDFGNFPSLSAVKSCNLDNCFSLQNEKHILDQLGSSPHIIKCFGHDQTFENGQEYYNIFLEYAAGGTLNDQLYNYGGKFPEKLVRHYTRSIVEGLKYIHENGFVHCDLKLPNILVFDNDNIKISDFGLAKEKGIVDKQQCRGTPMYMSPEAINDNVHESPADIWALGCVVVEMITGEPVWKNETDMWMLFTRIVIREEQPFIPDELSQQGKDFLDKCFARDPLKRWSADMLLKHPFISEDETVSSLKVFTNELLLSSSSSPKTHFDYPRWASSTITTLCTSSEEWIGMEFKHCFCSQEMTFHHLVTDQMPLN 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g00869 335 Pfam Protein kinase domain 5 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g00869 335 ProSiteProfiles Protein kinase domain profile. 3 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g00869 335 Gene3D Transferase(Phosphotransferase) domain 1 2 307 - -
Trre10g00869 335 ProSitePatterns Serine/Threonine protein kinases active-site signature. 126 138 IPR008271 GO:0004672|GO:0006468
Trre10g00869 335 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 3 288 - -
Trre10g00869 335 SUPERFAMILY Protein kinase-like (PK-like) 3 299 IPR011009 -
Trre10g00869 335 CDD STKc_MAPKKK 2 260 - -
Trre10g00869 335 SMART serkin_6 3 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g00869 335 ProSitePatterns Protein kinases ATP-binding region signature. 9 36 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g00869 Trre-Chr10 6779731 6781524 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g00869 1 295 MAP Kinase Kinase Kinase AT5G67080 48.377 1.57e-99 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Trre10g00869 Pkinase 2.9e-57 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g00869 - - tpra:123904139 588.186