Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre10g00864 | ATGGCCACCACTCCCCCTTCCTCCTCACCACCAAAACTCATCGCTACCGTTTCCTCTCTCACAAAAAAACCCCAACCCATCCCATGGACTCACCAAGAAACCATTAACCTCATCAGAGCTTATCAAGAGAAATGGTACTCTCTCAAACGTGGTCCACTTCGCGGCAGTCAATGGGAAGAAGTTGCTGTTGTAGTCGCCGCTAGATGTGGTTACGATTACAATCATCCTTCTAAAACTGCTCTTCAATGTCGTCATAAGATGGAAAAACTCCGTCAACGTCACCGATCTGAAAAGCACCGTCTCACTGCTACTTCCTCCGCTGTTTCTTCCCGATCTTGGCAGTATTTTCGTCTTATGGATGATCTTGAACGTGGTCCTCTTCCTATCTCAGCTCGACCTGTTCTTCATAATTTCCCTATCTCTGATGATGATGATAGTGATGGTGAGAGACGGAAAAAGCGTAGTGTTAGGTCAAGGAGTATGAATAATATTCTTAACCAGAAACCAGTTCTTACAAGACAACGTGTTGAAATTGATGATGATGATGAGGAGGAGGAAGACGAGGATGATGATGAAGAGGAAGAAGAAGGAGTGATGATGGTGAAGGGGTTGACGGCGGAGTTAAGAGGTTTTGCTGAGAGGATTGTTGGGTTGGAAAATAGGAAGATGGAGATGATGAAAGAAACTGAGAGATTTAGGTTGGAGATGGAGAATAAGAGGCTTCGTATGATACTTGAATCTCAGTGGAAGATTGTTGATTCCATTGGAAAAGCATTTGGGTCTTCTTAG | 789 | 0.4411 | MATTPPSSSPPKLIATVSSLTKKPQPIPWTHQETINLIRAYQEKWYSLKRGPLRGSQWEEVAVVVAARCGYDYNHPSKTALQCRHKMEKLRQRHRSEKHRLTATSSAVSSRSWQYFRLMDDLERGPLPISARPVLHNFPISDDDDSDGERRKKRSVRSRSMNNILNQKPVLTRQRVEIDDDDEEEEDEDDDEEEEEGVMMVKGLTAELRGFAERIVGLENRKMEMMKETERFRLEMENKRLRMILESQWKIVDSIGKAFGSS | 262 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre10g00864 | 262 | MobiDBLite | consensus disorder prediction | 178 | 197 | - | - | |
Trre10g00864 | 262 | MobiDBLite | consensus disorder prediction | 138 | 154 | - | - | |
Trre10g00864 | 262 | Gene3D | - | 29 | 96 | - | - | |
Trre10g00864 | 262 | SMART | 118neu2 | 36 | 127 | IPR006578 | - | |
Trre10g00864 | 262 | Coils | Coil | 201 | 221 | - | - | |
Trre10g00864 | 262 | FunFam | Trihelix transcription factor ASIL2 | 29 | 96 | - | - | |
Trre10g00864 | 262 | ProSiteProfiles | Myb-like domain profile. | 28 | 91 | IPR001005 | - | |
Trre10g00864 | 262 | Pfam | Myb/SANT-like DNA-binding domain | 28 | 122 | IPR044822 | - | |
Trre10g00864 | 262 | PANTHER | TRIHELIX TRANSCRIPTION FACTOR ASIL2 | 20 | 254 | IPR044823 | - | |
Trre10g00864 | 262 | MobiDBLite | consensus disorder prediction | 133 | 197 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre10g00864 | Trre-Chr10 | 6733585 | 6734373 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre10g00864 | 29 | 141 | Trihelix Transcription Factor Family | AT3G14180 | 29.752 | 1.62e-10 | 58.9 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | Trihelix | Trre10g00864 | Myb_DNA-bind_4 | 1.5e-16 | CL0123 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre10g00864 | - | - | mtr:11405483 | 365.925 |