Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g00843 ATGGATAATGAAGACATAATGAAAACTTTAGGAAATGTTGAAAGCAACATGGACATGATGACAATGATGATGCAAATGGACAAGTTTCATGATTCATATGAACCTTTTTATACCAACAATGAAAACGATCATTTCCCTTATGTAACTTCATCATTCACACCTTCTTTGTTCAATCCTCAACCAATATCTTATCCGATGACACCGTCTCTTCAAACGTCGAACAGAGTTCAAATCTCATCAGAAACAGTTAACAACGCTTCGTTTTCGTCCTACCCTGAGAAAAAGACATCAATGTCAGCAATGAGAGAGATGATATTCCGTATGGCGGTTATGCAACCGATTAATATCGATCCAGAAATGATAAAACCACCAAAGAGAAAGAATGTGAAGATTTCAAAGGATCCACAGAGTGTAGCAGCAAGACATAGAAGAGAAAGAATTAGTGAAAGAATAAGGATATTGCAAAGATTAGTTCCTGGTGGAACTAAAATGGATACAGCTTCAATGTTAGATGAAGCTATACATTATGTGAAGTTTTTGAAGAAACAAGTTCAAATGTTGGAACAAGCAGGGGCAAATAAACCTATGAATTTTGTTGGGTTTTCAGGAGTTGTTTCAAATGGGAATTTTAATTATTCTTCTAATTTGCTTAGAGGTTGTTCATCACCTTGTCAAATTGTGGGTCCTACTTCCAAAAAAATGCTTAGTTGA 711 0.353 MDNEDIMKTLGNVESNMDMMTMMMQMDKFHDSYEPFYTNNENDHFPYVTSSFTPSLFNPQPISYPMTPSLQTSNRVQISSETVNNASFSSYPEKKTSMSAMREMIFRMAVMQPINIDPEMIKPPKRKNVKISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQMLEQAGANKPMNFVGFSGVVSNGNFNYSSNLLRGCSSPCQIVGPTSKKMLS 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g00843 236 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 135 189 IPR036638 GO:0046983
Trre10g00843 236 CDD bHLH_AtIND_like 132 188 - -
Trre10g00843 236 Pfam Helix-loop-helix DNA-binding domain 141 180 IPR011598 GO:0046983
Trre10g00843 236 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 131 180 IPR011598 GO:0046983
Trre10g00843 236 SMART finulus 137 186 IPR011598 GO:0046983
Trre10g00843 236 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 51 214 IPR045843 GO:0003700|GO:0006355
Trre10g00843 236 Gene3D - 130 197 IPR036638 GO:0046983
Trre10g00843 236 FunFam BHLH transcription factor 134 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g00843 Trre-Chr10 6455845 6456555 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g00843 1 208 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G50330 52.093 1.17e-47 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre10g00843 HLH 1.4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g00843 - - gmx:100796649 219.55