Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g00842 ATGGCTCGAATGAGGACAACCCCACGACTGTCACGATCATCACTACCGCAATTAACGTTACGAACTCCGGTTCCCCCTATGCAAAACCAAATGTGTGGTGCACAAAGTCCGGTGAAAGAAAACCACTACCGCGGTGTTCGAAAGCGTCCGTGGGGCCGATACGCTGCAGAAATTAGAGACCCATTGAAGAAGAAAAATATTTGGTTAGGGACTTTTGACACTGCTGAAGAAGCTGCCCGTGCATTTGACCAAAAAGCAATTGCATTCCGTGGGGAAAAGGCTAAAACTAATTTCCCAATCTCCGAATACATCCTTGATGATGCTCAGATTCCTCCTGCTGCTCCTCCTGCTCATATTCCTCAATCTACTACTCCTCTGGTTAACAACTGTGAGACTAGTGATTGTCATTCGTCATGTCGTTAG 423 0.4657 MARMRTTPRLSRSSLPQLTLRTPVPPMQNQMCGAQSPVKENHYRGVRKRPWGRYAAEIRDPLKKKNIWLGTFDTAEEAARAFDQKAIAFRGEKAKTNFPISEYILDDAQIPPAAPPAHIPQSTTPLVNNCETSDCHSSCR 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g00842 140 ProSiteProfiles AP2/ERF domain profile. 42 99 IPR001471 GO:0003700|GO:0006355
Trre10g00842 140 FunFam Ethylene-responsive transcription factor 2 41 101 - -
Trre10g00842 140 SMART rav1_2 42 105 IPR001471 GO:0003700|GO:0006355
Trre10g00842 140 CDD AP2 42 101 IPR001471 GO:0003700|GO:0006355
Trre10g00842 140 Gene3D AP2/ERF domain 41 101 IPR036955 GO:0003700|GO:0006355
Trre10g00842 140 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 31 117 - -
Trre10g00842 140 PRINTS Ethylene responsive element binding protein signature 43 54 IPR001471 GO:0003700|GO:0006355
Trre10g00842 140 PRINTS Ethylene responsive element binding protein signature 65 81 IPR001471 GO:0003700|GO:0006355
Trre10g00842 140 MobiDBLite consensus disorder prediction 1 44 - -
Trre10g00842 140 SUPERFAMILY DNA-binding domain 42 101 IPR016177 GO:0003677
Trre10g00842 140 MobiDBLite consensus disorder prediction 7 36 - -
Trre10g00842 140 Pfam AP2 domain 42 91 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g00842 Trre-Chr10 6423262 6423684 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g00842 39 100 AP2-EREBP Transcription Factor Family AT5G44210 79.032 5.32e-31 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre10g00842 AP2 2.7e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g00842 K09286 - tpra:123904184 117.857