Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g00839 ATGAGTTCTGGTGACAAAAAATCTCTTCTTGACTACGACAATCTCATACCGTCCAAGGGTGATTTGAGCGAAGGAACTTTTAAGGTGAGGGTTTTGAAAAAATGGCTTGTGTACGATGTGGTTGTTCCTGGAAAGATCATCTCCGTGGATATGATTTTAAAGGATAATAATGGTCACCAAATCGTTGCTTCCATTCCCGAATCTTTGCGTTCTATGTTCGATTTCCAGTTGGTGGAAGGAAACATCTATACACTATCCAACTTATCTCTTAAGTCCAACGATGGTTCTATTGCTACGAGTTTGCATGATCAGGTGTTGGAGTTCAACTGTCGAACTGCTCTTAAGTTGTTCTGGGCTTATGGAATGCCTCATCCTGGCGATTCCTTTGCTCCTTCTGATCATTCTGATAGGATGGATCACCGTCTTAATTATATGTTGAATGTTTTTGGAGTTGTTACTTATATCAGACACAACAAAACTTTTTTTCTTAATGGTTCTACCACAAAGACTCTGAATTTGAAACTGACTGATAACAGTGAATGTAGTAATACTTTTGAAGTTGTGCTTTCTGGAGATTTAGTTGATCAATTTCGTGATGAGGTGGAAAACATTCCAATGGGTTTGCCTCTGATTGCTTTGCAACGTGCAAGAGTTTATGAAACCCAAGGTAAAACTGTGATCCAGAGCGTTCATGGTGTTACTAAGCTCTTTGTTAATCCTCAGTTCAGTGAGGCCAAAAAGTTTAGGAAGAGTCTTGTGCTTGCCTTGAACAAAACTCAGAAAAAGTTTGGCATTCCTCCATGTGAGAAACCCATGGTCTTCAACTTAGAAACCCCTTACCAGTTTAAATCAATTGCTCAGCTCAAGGGAGATTCAAAGTTTGGTATCTTTGTTGTTAGTGCAAGACTTGCTGACATGTCTGCTGTAAATGCTTGGTGGTACCCTGTTTGCCATTGTGATGCTATCATTGAGTCTTATATTGGTTCTTTTTTATGTCATAAGTGTCATGCCACTGATTTTGAACCAATGCGCAAGTATAGGGCAAAACTGGTTATTCAGGATGAAAGCGGCACTCTCCAGCTCGAATCATTTGATGATGTTCTACTCCCTGTTGCTACTTATAATCCTAAGAAGCCGGGCATTGCTAGGTATTATTTCCCAAGGGCCTTTGATCACATTACCGGAAAGAAGATTATTTACATGATTGAGAAGAAGAAACAAAGTCCTGCCAGCAACAATGAAGTGTATGAGCTTCTTTGTGTATCTGATGATCAGAAAGTTATTGATCATTTTCTTCAAACTTCAAAGATGGTTTCAAACATTATGGATACAAATTGTGATTTAATCAAGACAGCCATGTTTGAATCCACCCTGTCCACCACTGAGCGTAGCTTTTCTAACTATGTGGTTCCCATTGCTGCTAGAAGTTCAAAGTCTGAGGCTGGTGAGAGTTCAACCTCTGGACCTAAAATGTCAAGCATTACAGACGTTCTTTCAAGATCTGTTCGTGCTAGGGTCCGGCGTTAG 1527 0.3988 MSSGDKKSLLDYDNLIPSKGDLSEGTFKVRVLKKWLVYDVVVPGKIISVDMILKDNNGHQIVASIPESLRSMFDFQLVEGNIYTLSNLSLKSNDGSIATSLHDQVLEFNCRTALKLFWAYGMPHPGDSFAPSDHSDRMDHRLNYMLNVFGVVTYIRHNKTFFLNGSTTKTLNLKLTDNSECSNTFEVVLSGDLVDQFRDEVENIPMGLPLIALQRARVYETQGKTVIQSVHGVTKLFVNPQFSEAKKFRKSLVLALNKTQKKFGIPPCEKPMVFNLETPYQFKSIAQLKGDSKFGIFVVSARLADMSAVNAWWYPVCHCDAIIESYIGSFLCHKCHATDFEPMRKYRAKLVIQDESGTLQLESFDDVLLPVATYNPKKPGIARYYFPRAFDHITGKKIIYMIEKKKQSPASNNEVYELLCVSDDQKVIDHFLQTSKMVSNIMDTNCDLIKTAMFESTLSTTERSFSNYVVPIAARSSKSEAGESSTSGPKMSSITDVLSRSVRARVRR 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g00839 508 Gene3D - 128 253 IPR012340 -
Trre10g00839 508 MobiDBLite consensus disorder prediction 479 499 - -
Trre10g00839 508 SUPERFAMILY Nucleic acid-binding proteins 26 114 IPR012340 -
Trre10g00839 508 CDD RPA1_DBD_A_like 28 112 - -
Trre10g00839 508 Gene3D - 15 117 IPR012340 -
Trre10g00839 508 Gene3D - 275 429 IPR012340 -
Trre10g00839 508 MobiDBLite consensus disorder prediction 479 508 - -
Trre10g00839 508 CDD RPA1_DBD_B_like 147 252 - -
Trre10g00839 508 SUPERFAMILY Nucleic acid-binding proteins 280 402 IPR012340 -
Trre10g00839 508 SUPERFAMILY Nucleic acid-binding proteins 141 252 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g00839 Trre-Chr10 6398789 6408574 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g00839 26 367 Core DNA Replication Machinery Family AT4G19130 23.913 1.30e-12 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g00839 - - tpra:123922259 393.275