Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g00837 ATGCCATGGAGAGTTCCATCATTTTTGGAAGAATGCTCGGCCAGATATCACCTTATTCGCCCTTCTTGCTTCCAGGGGTCCATTCGTATCAAGGTTCGTGTTCTTAGATTATGGAAGATTCCCTCCTTTCTTAATCCTTCTGAGATAAGTTCTATTGAGATGGTGCTGATTGATGATAAGGGTGCCAAGATTCATGCTTCTATTAAGAAGCAGTTGTTGTATATGTTTGATTCCAAGATTGTTGAAGTTTGTAGTCATACCCATGACTATGAATTTCTGGTTGATGTTATTGGCTTAATGACTGGGATATCTGCGGAAAGGGAATACATAAGGGATGGAAAGATTACCAAGATGGTAATTGTTGAGTTAACTGATGCTAGTGGTAAATGTGAATGTGCTTTGTTTGGTGACTATGTCACTGAGTTGAACAAGAAAATGGGGAAGGCTGGTGAAGGGCTTCCAGTGATTGTTGTGCAGTTTGCAAAAATCAAGATATTCAGAGATGAAGCTTCTATTCAAAATGTAATCAATACCACCAGGATTTTCATAAATCCTGATATCCCTGAAGCTATTGAGTTTAAAAATAGCATTGCTCTGCGTGGGATTGATGTGGAATCCGTTATTCCTGTTATTGGAGGGAGGGCTAAACCTACTATGGAAGAAGAGTTTCTTCGTATGCACCCAAAAAAGAAAGTTGCTGATCTCACTGACTTGGAGGAAGAGGGAATGTTTGCTGTATATGGAGTTGTATCTGGAATAGTTCAGGGTGAAGACTGGTGGTACCCAGCCTGCAAGTGTCATAAGGCTGTGCTTCCTGATTCTGGTGCTTACTACTGCAATGGATGCTCCCGACATGTTTTCCAATGCATCCCTAGGTTCAGGGTTAAGGTTGAGGTATCGGACGGTGATTCGACATCTGTTTTTGTTCTTTTTGATTCTGACATGAGTTATATACTCGAGAAAGCATGTGCTCATTTTGTTGGAAAAGCAAAGGTTCCCAATGGAGGTTCCGCCCCGCCTGAGTTTGATTCATTGATTGGCTCTGAGGGCCCTTTCAACACTCCTGTAAAGCCAATGTCTCAGGCTATTGAAATTAACTCTGATGATGATTTGGATGATGTTGACATTGTGCAAGATACGCAGCCTCTGTCTTTCCTGAAAGACATTATTGTCACTCCCCCTATTGATGCTAAGACCTCAGCTGAAGAGGATCCTTTGTTGTCTTCTGTGAAGAGAAACTTGGTGGATCAGTTTGATGGCGTTTCTAAGGTTGAAGCGAAGAGGCCTATAAGGCGTGTTAAGGTTAAAATCGAGAAGGAGTAG 1323 0.418 MPWRVPSFLEECSARYHLIRPSCFQGSIRIKVRVLRLWKIPSFLNPSEISSIEMVLIDDKGAKIHASIKKQLLYMFDSKIVEVCSHTHDYEFLVDVIGLMTGISAEREYIRDGKITKMVIVELTDASGKCECALFGDYVTELNKKMGKAGEGLPVIVVQFAKIKIFRDEASIQNVINTTRIFINPDIPEAIEFKNSIALRGIDVESVIPVIGGRAKPTMEEEFLRMHPKKKVADLTDLEEEGMFAVYGVVSGIVQGEDWWYPACKCHKAVLPDSGAYYCNGCSRHVFQCIPRFRVKVEVSDGDSTSVFVLFDSDMSYILEKACAHFVGKAKVPNGGSAPPEFDSLIGSEGPFNTPVKPMSQAIEINSDDDLDDVDIVQDTQPLSFLKDIIVTPPIDAKTSAEEDPLLSSVKRNLVDQFDGVSKVEAKRPIRRVKVKIEKE 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g00837 440 PANTHER OS03G0429900 PROTEIN 26 341 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Trre10g00837 440 Pfam Replication factor-A C terminal domain 243 321 IPR013955 -
Trre10g00837 440 Gene3D - 74 203 IPR012340 -
Trre10g00837 440 CDD RPA1_DBD_A_like 29 82 - -
Trre10g00837 440 SUPERFAMILY Nucleic acid-binding proteins 89 202 IPR012340 -
Trre10g00837 440 CDD RPA1_DBD_B_like 95 194 - -
Trre10g00837 440 Gene3D - 212 379 IPR012340 -
Trre10g00837 440 SUPERFAMILY Nucleic acid-binding proteins 234 352 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g00837 Trre-Chr10 6389166 6394564 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g00837 93 319 Core DNA Replication Machinery Family AT5G08020 25.105 7.76e-12 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g00837 - - tpra:123904946 410.994