LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre10g00828	ATGCATGATCATTCCACCGACACAATGAACGACCAACTTTCTAACCAAACATCAATCTTCGGTCTCCGTTTATGGGTTGTCCTCGGCGTCTCCGTCGGTGTCGTCATCGTTCTCCTCCTCTTCCTCATCTCCGTTTGGTTAGCTTTCAAACGTAACAACAAATCAAAAACTATTAAACCTTCCATCCCTGATGACTCTAAAGAAATTCAAGAAATCAAACTCGACCTTGTTCCACCTCAACCCGACCCGTTTCATGAACCCGACCCATTATCATCATCATCTGAACAACAACAACAACGTAATAATCAACTACACCCAGAAGAAGAAACTACTCCGTTAAGTTACAAAAGAATTCAGTTTGAGATAGGTAAAAATCATAGGATATCTTATCCTGAACAACGTGGTGGTTCTGTTATAAAGTCTTCTAATTCTCGTGAACATAGTGGTGAATCTAGACCGTTGGATCAAGTTTCTACTGTGATACCTCAAGTTTCTCATCTTGGTTGGGGTCATTGGTATACACTTAGAGAATTAGAAGATGCTACTAATGCTTTTGCTCCTGAGAATGTTATTGGTGAAGGTGGTTATGGAATTGTTTATCATGGTATTTTGAAGGATAATACTAATATTGCAATTAAGAATTTGCTTAATAATAGAGGACAAGCTGAAAGAGAATTCAAGGTTGAAGTGGAAGCGATAGGACGAGTTCGACATAAGAATTTAGTCAGGTTGCTTGGTTATTGTGCTGAAGGAGCTCATAGAATGCTAGTGTATGAGTTTGTTGACAATGGTAACTTGGAGCAATGGTTACATGGTGATGTTGGGCCTTGGAGTCCTCTAACATGGGAGATTCGAATGAACATTATTCTCGGAACGGCTAAAGGTTTGACTTATCTTCATGAGGGGCTAGAACCCAAAGTTGTTCATCGCGATATTAAATCAAGCAACATTTTACTTAATAAGCAATGGAATTCAAAGGTTTCTGATTTTGGCCTTGCAAAACTTCTTAGCCCTGAGAGCAGCTATATTACAACGCGAGTCATGGGTACATTTGGATATGTAGCTCCTGAATATGCAAGTACTGGAATGTTGAATGAACGTAGTGATGTATATAGTTTCGGAATTCTTATTATGGAAGTGATTACAGGCAGAAATCCAGTTGAATATAGTCGTCCTGCAGAAGAGGTGAATTTAGTTGAGTGGCTCAAAAAGATGGTTGGTAACAGAAATCCAGAGGGAGTGTTGGATCCAAAGCTTCCCGAGAAACCAACTTCGAGGGCACTAAAGCGAGCTCTTCTTGTAGCCTTACGCTGCACCGACCCTAATGCACAAAAGCGGCCGAAAATGGGGCATGTAATACACATGCTTGAAGCTGAAGATTCACCTTACAAAGAGGAGCGCAGAATTAGAAGGGAGGCAGGCGTAGGAAATTCACCTACCGCCAGAATAGAGGATAGATCGAAAGAGGAGGCGGAGACCGCTGTATCTATTGATGACGGTATGCTTGAAAACGAGAAGTGTAGTGATGAGACAAGATCAAATCATGAAATAGAGAAGCAATAA	1563	0.4082	MHDHSTDTMNDQLSNQTSIFGLRLWVVLGVSVGVVIVLLLFLISVWLAFKRNNKSKTIKPSIPDDSKEIQEIKLDLVPPQPDPFHEPDPLSSSSEQQQQRNNQLHPEEETTPLSYKRIQFEIGKNHRISYPEQRGGSVIKSSNSREHSGESRPLDQVSTVIPQVSHLGWGHWYTLRELEDATNAFAPENVIGEGGYGIVYHGILKDNTNIAIKNLLNNRGQAEREFKVEVEAIGRVRHKNLVRLLGYCAEGAHRMLVYEFVDNGNLEQWLHGDVGPWSPLTWEIRMNIILGTAKGLTYLHEGLEPKVVHRDIKSSNILLNKQWNSKVSDFGLAKLLSPESSYITTRVMGTFGYVAPEYASTGMLNERSDVYSFGILIMEVITGRNPVEYSRPAEEVNLVEWLKKMVGNRNPEGVLDPKLPEKPTSRALKRALLVALRCTDPNAQKRPKMGHVIHMLEAEDSPYKEERRIRREAGVGNSPTARIEDRSKEEAETAVSIDDGMLENEKCSDETRSNHEIEKQ	520

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre10g00828	520	SMART	serkin_6	185	464	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre10g00828	520	MobiDBLite	consensus disorder prediction	502	520	-	-
	Trre10g00828	520	MobiDBLite	consensus disorder prediction	87	109	-	-
	Trre10g00828	520	CDD	STKc_IRAK	191	457	-	-
	Trre10g00828	520	FunFam	Probable serine/threonine-protein kinase At1g01540	165	260	-	-
	Trre10g00828	520	Coils	Coil	205	225	-	-
	Trre10g00828	520	MobiDBLite	consensus disorder prediction	77	110	-	-
	Trre10g00828	520	FunFam	Putative receptor-like serine/threonine-protein kinase	261	471	-	-
	Trre10g00828	520	Pfam	Protein kinase domain	188	453	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre10g00828	520	Gene3D	Phosphorylase Kinase; domain 1	154	260	-	-
	Trre10g00828	520	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	307	319	IPR008271	GO:0004672\|GO:0006468
	Trre10g00828	520	MobiDBLite	consensus disorder prediction	131	155	-	-
	Trre10g00828	520	PANTHER	OS01G0323000 PROTEIN	5	472	-	-
	Trre10g00828	520	ProSitePatterns	Protein kinases ATP-binding region signature.	191	213	IPR017441	GO:0005524
	Trre10g00828	520	SUPERFAMILY	Protein kinase-like (PK-like)	160	457	IPR011009	-
	Trre10g00828	520	Gene3D	Transferase(Phosphotransferase) domain 1	261	473	-	-
	Trre10g00828	520	MobiDBLite	consensus disorder prediction	470	520	-	-
	Trre10g00828	520	ProSiteProfiles	Protein kinase domain profile.	185	464	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre10g00828	Trre-Chr10	6336687	6339524	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre10g00828	96	459	Trihelix Transcription Factor Family	AT1G70460	40.909	1.82e-86	279

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-V	Trre10g00828		Pkinase	1.5e-45	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre10g00828	-		-	gmx:100797440	756.903