Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g00826 ATGGCGGATGAAGATGGCTCATCAAGCAGGAAGCGAAGACCAACCAGAGGACCTGATGCCACAGCTCGCAGCCAAGCATTAGAGCGTCTCAAAGCACGCCGATCTGGCGATCGTGGATCTGACACCGCCGGACCTCAAATCAGGTTAGAAAACCCTATCTACGACACAATCCCTGAGGAAGAGTACACCGCACTAGTCGCCAGTCGCCGCGATCAAGCGCGGTCATTCATCGTCGACGATGAAGGCATCGGTTATGGCGACGAAGGCGAAGAAGAGGATTGGTCCAAAGCTGGTTTCTCCCTCTCTGACGATGAATCTGAAGGCGAATCGGAGAAACCTAAACGGAAGAAAGAGAATTCTCAAACTAAACGTCCTTCTTCTTCTTCTGCTGCTGCTAAACTCTCAGCCGCTGCTGCTATGATGGGAGGGCAGAGAGTGTCTTCCATGTTCACTTCCGCTGTTTTTAAGAAAAGTAGAGACGACAAGGCTTGCGAGAGTCTCGTCGATGAGGTTCTCAAGGAGTTTGCGCCGGATGAGACTGATAAACTCAGCCGCAGAAAAGTGCAATCGAATTCGTCTTCAATTTCGAATGATGCTGTGCAGATTAAGAACTCTGCTGAATCTGTAAGAAGTTCTTTGCACCAAAATTTTGTAGTTGCAAATGTTGATACTGATTCTGTTAAGGTTAATAAGGATAAGGATAATGGATCTAGGTTAGGGTTAGAGCAAAAATGTGAAGTAGAAGTGAGGGAAAGTTTGGGAAATGATGAGGGACGAGTGGTGGTGGAATCTAATGATTGGTCTTCTCCGAGTAATGAGGATTTAGTCGAAGAGAAAGTGGCAAAGGCGAAAGAGGATGAAATGGAAGCAAAACCTGTTATTAAAAAGGAGGGTTTTACTTTGAATGCGAAAGTTAATCAAGAGGTGGTGGACCCGAAGTCGTATGCCACTGCTGGTTGGAAGGCAGCGAGGAATGGTGCTGGTGGAGGAGGGGAAACAAACATTGCTGATTTGAATTCGAATAATCAACAAAATTCCGAGTTCAATTTGGAGCCAGAGGGATCTCTTCCTTTCTACATACTTGATGCTTATGAGGAGTATTATGGAGCCAATATGGGTACTCTTTATTTGTTTGGGAAGGTCAAAACAGGGAATTTGTATCAGAGTTGCTGTGTTGTTGTAAAGAACATGCAGAGGTGTGTCTATGCAGTTCCAAGTCATCCTCTGCATTCCATAGATGAGATGATAAAGCTTGAGAAAGATGTCCAAGAGTCTCGAGTTTCTCCCGCAGATTTCCGTAAAAAGCTGCAAGATGCAGTATCTGATATAAAGAATGAGATAGCAAAACATCTGGTGGATCTGGGGGTTTCTACCTTTAGCATGGCACCTGTTAAGAGGAAATATGCATTTGAACGATCTGACATTCCTGCAGGTGAAAATTATGTGGTGAAAATAAATTATCCGTTCAAGGATACAGCACTTCCAGTAGACCTCAAAGGAGAAAGTTTCGGTGCTCTTCTTGGAGCTCGAAGCAGTGCACTTGAGCTATTTCTGATTAAAAGAAAAATTAAGGGGCCTTCATGGCTACAGGTTTCAAACTTTTCTACCTGCTCAGCTTCCCAAAGGGTTAGCTGGTGCAAATTTGAAGTGACTGTTGACTCTCCTAAAGACATCAGGGTTTCTTCTTCATCTTCATCAAAAATCACTCTCGTGATTCCTCCTGTGGTTGTCACGGCAATAAACTTGAAAACCACCATAAATGAAAAACAGAACATAAATGAAATTGTATCTGCATCTGTCGTCAGTTGCAATATGGTTAAGATCGACACTCCTATGCTGGCTTCAGAGTGGAAGAGACCTGGAATGCTGACCCATTTTACTGTTATTCGCAAACTTGATGGGAATATATTTCCAATGGGATTCAATACAGAGGTCACAGACAGAAACGTAAAAGCTGGGTCAAATGTTCTTTGTGTTGAAAGCAGTGAAAGAGCTTTGTTAAATCGTCTAATGTTACAATTACACAAGATGGATAGCGATGTTCTTGTTGGACATAATATTTCTGGATTTGACCTGGATGTTCTTCTCCACAGATCTCAGGTTTGCAGGGTACCAAGCAGCATGTGGTCTAAACTGGGCCGTCTCAACCGTTCTACAATGCCTAAGCTCGATAGAAGAGGCAAAACATTTGGTTTTGGAGCTGATCCTGCTATCATGTCTTGTGTTGCCGGTCGGCTTCTTTGTGATACATATTTGTGTTCCCGTGACCTATTAAAGGAGGTTAGTTATTCTTTAACCCACCTTGCAAAAACACAGCTGAACCAGTCTCGGAAGGAAGTTGCCCCACATGATGTTCCAAAAATGTTTCAAACTGCAAAATCCCTGATGGAGCTAATTGAATATGGTGAAACGGATGCATGGTTGTCCATGGAACTCATGTTTTATTTGAGTGTCCTTCCTCTCACACGCCAGTTGACTAATATAAGTGGCAATCTGTGGGGAAAAACTCTTCAGGGTGCCCGGGCACAGAGGGTGGAGTATCTTTTGTTGCATGAGTTCCATAAAAAGAAATATATTGTTCCAGACAAGTTTTCTAATAACGCAAAAGAAACAAAGTTGACAAAACGTAGAGTAACTCATGGCGTCGACGATGGCAACTTTGATGATGCAGATATTAACGATGCAAACTATCATAATGATGCTTCTGAAAGTGATCATAAGAAAAGTAAAAAGGCTGCTTCCTATGCTGGAGGGCTGGTCTTAGAGCCAAAGAAGGGTCTATATGACAAATATATATTACTACTGGACTTCAACAGTCTATACCCTTCTATCATTCAGGAATATAATATCTGCTTCACTACTGTTGAAAGATCTACAGATGGATCTTTTCCTCGTCTGCCATCCAGTAAAACTACTGGAGTCTTGCCAGAGTTGCTCAAAAAGCTTGTTAAGTGGAGGCGAGATGTGAAGACATGGATGAAGACTGCATCTGGTCTTAAACGCCAGCAACTGGACATTCAGCAGCAAGCACTGAAGCTTACTGCAAACAGTATGTATGGATGCCTGGGATTTTCCAATTCGAGATTTTATGCAAAGCCGCTGGCTGAGCTCATAACCCTACAAGGAAGGGAGATTCTACAAAGTACTGTTGATCTTGTTCAAAATAACTTGAATTTAGAGGTGATCTATGGTGATACTGATTCAATAATGGTTTACAGTGGGCTAGATGATATTGCAAAAGCAACTTCAATATCTAAGAAAGTTATTCAAGAGGTCAATAAGAAATATAGGTGCTTAGAAATCGATCTTGATGGTTTGTATAAGAGGATGCTACTTCTCAAGAAAAAGAAATATGCAGCTGTTAAGGTGCAGTTTAAAGATGGCACCCCGTATGAGGTTATTGAACGTAAAGGTCTTGATATTGTCCGCCGTGACTGGAGCTTATTAGCGAAAGATTTAGGAGATTTTTGCTTGACTCAAATTTTATCGGGAGGGTCATGCGAAGATGTCGTCGAATCAATTCATAATTCTCTCATGAAGGTACAAGAAGAAATGAGGAACGGACAAGTAGCACTAGAAAAATATGTCATTACAAAGACATTGACTAAACCACCCGAAGCATATCCTGATGCCAAAAACCAGCCACATGTTCTTGTGGCACAAAGATTGAAGCAACAAGGTTACACCTCTGGTTGCTCTGTTGGTGATACAATCCCTTATATAATTTGCTGTGAACAGGGTGGTAGTTCAGGCAGTGCAACGGGAATTGCTCTACGTGCCAGACATCCTGATGAACTAAAACAAGAACAGGGGACATGGCTAATTGATATTGATTACTATTTGTCACAACAGATTCATCCTGTGGTATCACGTCTTTGTGCATCTATTCAGGGTACAAGCCCTGAAAGACTTGCTGATTGTTTAGGGCTTGACACATCAAAGTTTCAACATAAATCAAGTGAAGCTTTAAGTGACGATCCTACAAGCTCACTCTTGTTTGCTGGTGATGATGAGGAGAGGTATCGGGGATGTGAGCCGCTGGTCTTGTCATGCCCCAGCTGCTCTGTTACATTTGACTGCCCACCTGTGTTCAAATCTATTTGTATGTTGGGAAATGAAAAGCCAACCAGCTTAGGTGTAGAGGAATCTGACTACAATTTCTGGCGCAAGCTGTGCTGTCCCAAATGCTTTGAAAATGGTGTTGGTAGAATTTCTCCTGCAATGATAGCCAATCAGGTCAAACTGCAAGCAGAGAAGTTTGTTTTAATGTATTATAGAGGTTTACTAATGTGTGATGATGAAACATGCAAGCATACAACGCGAAGTGTCAGCTTTCGTTTGGTTGGTGATTCTGAGCGAGGAACTGTTTGTCCAAATTATCCTCGCTGCAATGGGCATCTTAATAGAAAGTACACTGAAGCCGACTTGTACAAGCAGCTCTCATATTTTTGTCATGTGTTTGATACTGTTTGTGGTATAGAAAAGATGGAGGCAAAGTCTAGGATACCGATAGAGAAGGAGTTAATCAAAATTAGGCCAGTAGTCGATCTTGCTGCATCAACAATACAAAAGATCAGGGACCGTTGTGCCTTTGGGTGGGTGAAGCTGCAGGATCTGGTTGTTACAATTTAA 4632 0.4227 MADEDGSSSRKRRPTRGPDATARSQALERLKARRSGDRGSDTAGPQIRLENPIYDTIPEEEYTALVASRRDQARSFIVDDEGIGYGDEGEEEDWSKAGFSLSDDESEGESEKPKRKKENSQTKRPSSSSAAAKLSAAAAMMGGQRVSSMFTSAVFKKSRDDKACESLVDEVLKEFAPDETDKLSRRKVQSNSSSISNDAVQIKNSAESVRSSLHQNFVVANVDTDSVKVNKDKDNGSRLGLEQKCEVEVRESLGNDEGRVVVESNDWSSPSNEDLVEEKVAKAKEDEMEAKPVIKKEGFTLNAKVNQEVVDPKSYATAGWKAARNGAGGGGETNIADLNSNNQQNSEFNLEPEGSLPFYILDAYEEYYGANMGTLYLFGKVKTGNLYQSCCVVVKNMQRCVYAVPSHPLHSIDEMIKLEKDVQESRVSPADFRKKLQDAVSDIKNEIAKHLVDLGVSTFSMAPVKRKYAFERSDIPAGENYVVKINYPFKDTALPVDLKGESFGALLGARSSALELFLIKRKIKGPSWLQVSNFSTCSASQRVSWCKFEVTVDSPKDIRVSSSSSSKITLVIPPVVVTAINLKTTINEKQNINEIVSASVVSCNMVKIDTPMLASEWKRPGMLTHFTVIRKLDGNIFPMGFNTEVTDRNVKAGSNVLCVESSERALLNRLMLQLHKMDSDVLVGHNISGFDLDVLLHRSQVCRVPSSMWSKLGRLNRSTMPKLDRRGKTFGFGADPAIMSCVAGRLLCDTYLCSRDLLKEVSYSLTHLAKTQLNQSRKEVAPHDVPKMFQTAKSLMELIEYGETDAWLSMELMFYLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHEFHKKKYIVPDKFSNNAKETKLTKRRVTHGVDDGNFDDADINDANYHNDASESDHKKSKKAASYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSTDGSFPRLPSSKTTGVLPELLKKLVKWRRDVKTWMKTASGLKRQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITLQGREILQSTVDLVQNNLNLEVIYGDTDSIMVYSGLDDIAKATSISKKVIQEVNKKYRCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGTPYEVIERKGLDIVRRDWSLLAKDLGDFCLTQILSGGSCEDVVESIHNSLMKVQEEMRNGQVALEKYVITKTLTKPPEAYPDAKNQPHVLVAQRLKQQGYTSGCSVGDTIPYIICCEQGGSSGSATGIALRARHPDELKQEQGTWLIDIDYYLSQQIHPVVSRLCASIQGTSPERLADCLGLDTSKFQHKSSEALSDDPTSSLLFAGDDEERYRGCEPLVLSCPSCSVTFDCPPVFKSICMLGNEKPTSLGVEESDYNFWRKLCCPKCFENGVGRISPAMIANQVKLQAEKFVLMYYRGLLMCDDETCKHTTRSVSFRLVGDSERGTVCPNYPRCNGHLNRKYTEADLYKQLSYFCHVFDTVCGIEKMEAKSRIPIEKELIKIRPVVDLAASTIQKIRDRCAFGWVKLQDLVVTI 1543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g00826 1543 CDD DNA_polB_alpha_exo 573 824 - -
Trre10g00826 1543 Gene3D Palm domain of DNA polymerase 901 1126 IPR023211 -
Trre10g00826 1543 PRINTS DNA-directed DNA-polymerase family B signature 1008 1020 IPR006172 GO:0000166|GO:0003676|GO:0003887
Trre10g00826 1543 PRINTS DNA-directed DNA-polymerase family B signature 1061 1069 IPR006172 GO:0000166|GO:0003676|GO:0003887
Trre10g00826 1543 PRINTS DNA-directed DNA-polymerase family B signature 932 945 IPR006172 GO:0000166|GO:0003676|GO:0003887
Trre10g00826 1543 MobiDBLite consensus disorder prediction 89 122 - -
Trre10g00826 1543 Gene3D - 1139 1325 IPR042087 -
Trre10g00826 1543 MobiDBLite consensus disorder prediction 176 195 - -
Trre10g00826 1543 Coils Coil 1089 1109 - -
Trre10g00826 1543 SUPERFAMILY DNA/RNA polymerases 857 1310 IPR043502 -
Trre10g00826 1543 CDD POLBc_alpha 907 1311 IPR045846 GO:0003887|GO:1902975
Trre10g00826 1543 MobiDBLite consensus disorder prediction 1 18 - -
Trre10g00826 1543 Pfam DNA polymerase alpha subunit p180 N terminal 27 94 IPR024647 -
Trre10g00826 1543 Gene3D - 398 524 - -
Trre10g00826 1543 MobiDBLite consensus disorder prediction 80 138 - -
Trre10g00826 1543 SUPERFAMILY Ribonuclease H-like 353 861 IPR012337 -
Trre10g00826 1543 PANTHER DNA POLYMERASE ALPHA CATALYTIC SUBUNIT 19 1542 - -
Trre10g00826 1543 MobiDBLite consensus disorder prediction 1 57 - -
Trre10g00826 1543 Pfam DNA Polymerase alpha zinc finger 1336 1539 IPR015088 GO:0003887|GO:0006260
Trre10g00826 1543 FunFam DNA polymerase 1139 1325 - -
Trre10g00826 1543 NCBIfam DNA polymerase (pol2) 53 1293 - -
Trre10g00826 1543 Pfam DNA polymerase family B, exonuclease domain 388 766 IPR006133 -
Trre10g00826 1543 ProSitePatterns DNA polymerase family B signature. 1063 1071 IPR017964 GO:0000166|GO:0003676
Trre10g00826 1543 Gene3D - 573 886 IPR036397 GO:0003676
Trre10g00826 1543 FunFam DNA polymerase 1334 1529 - -
Trre10g00826 1543 Gene3D DNA Polymerase alpha, zinc finger 1335 1528 IPR038256 -
Trre10g00826 1543 Pfam DNA polymerase family B 832 1295 IPR006134 GO:0000166|GO:0003677
Trre10g00826 1543 Gene3D Helix hairpin bin 971 1022 - -
Trre10g00826 1543 SMART polmehr3 573 1075 IPR006172 GO:0000166|GO:0003676|GO:0003887
Trre10g00826 1543 Gene3D - 358 557 - -
Trre10g00826 1543 FunFam DNA polymerase 573 887 - -
Trre10g00826 1543 FunFam DNA polymerase 973 1022 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g00826 Trre-Chr10 6311245 6322338 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g00826 5 1541 Core DNA Replication Machinery Family AT5G67100 60.900 0.0 1856
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g00826 K02320 - gmx:100798779 2248.4