Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g00821 ATGGCAGATAATATCTCTAATAATTCCTCACAAGATGAAATCTCTCTTTTTCTCCATCAAATTCTCCTCCGTTCATCTTCCATGCCTGGATCCATCAACTCAAACCCACTTCAAGATGGAAACATCTCACCCTTTCATTCCACTTTCAGACCAAACCATCCTTTAAATGTCTCTTCATCTTCTGTTGCTGGAGGTGGTGGAGGAGGAGGACTCAGTGGTAATGACACTGATGAATATGACTGTGAAAGTGAGGAGGGTGTTGAAGTATTAACTGAAGAAATTCCAAGAAAATCTGGTGCTTCTAGGAGTTCTTCAAAAAGAAGTAGAGCAGCTGAAGTTCATAACTTGTCTGAAAAGAGAAGGAGGAGTAGGATCAATGAGAAAATGAAGGCTTTACAAAATCTAATTCCTAATTCTAACAAGACTGATAAGGCTTCAATGCTAGATGAAGCTATTGAATACCTTAAACAGCTTCAGCTCCAAGTACAGATGCTGTCATTGAGAAATGGATTGAGTTTGCATCCCATGTGCTTTTCCGAAGGCCTGCATTCTCTGCCATTTTCTCGCATTAGCACAGAGTTGAATGAAGGAAACCGGTCTGCCCCTTTAAACATGCCATCTACTCTGCCTCATCCCCAAGACAATCCGTTGCTCTATACATCCAATCTACCTAACAAAAACACATTGCCGAGTCAGCCATCAATGTCCTCATATCCTTCATATATTAACAACACAGAAACTTCTTTCGGTCTGGAATCCCGTACTCCAGCACAGAAAAAACGTCTTCAACAATCTTCAGAGCCAATAGACGGTAAAGACATGTTGCAGCACCAGCAATCGAATCCAATCTATTCTGCTACCAATCTATTAGGTGGTTCTCAAGTTGTCAAAGAATTCGAATCAAGCACGATGGCTATACCTACTACTAACAATTCATCGCAAACATGTATCACCGGAAGAGATCAGTCAGGAGCGATCATGAGAAATGCTGAGGCCAACATTATATTTTCATCGCAGTTAAGTAGGTAA 1029 0.4091 MADNISNNSSQDEISLFLHQILLRSSSMPGSINSNPLQDGNISPFHSTFRPNHPLNVSSSSVAGGGGGGGLSGNDTDEYDCESEEGVEVLTEEIPRKSGASRSSSKRSRAAEVHNLSEKRRRSRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLSLRNGLSLHPMCFSEGLHSLPFSRISTELNEGNRSAPLNMPSTLPHPQDNPLLYTSNLPNKNTLPSQPSMSSYPSYINNTETSFGLESRTPAQKKRLQQSSEPIDGKDMLQHQQSNPIYSATNLLGGSQVVKEFESSTMAIPTTNNSSQTCITGRDQSGAIMRNAEANIIFSSQLSR 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g00821 342 Gene3D - 104 167 IPR036638 GO:0046983
Trre10g00821 342 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 106 168 IPR036638 GO:0046983
Trre10g00821 342 CDD bHLH_AtPIF_like 112 171 IPR047265 -
Trre10g00821 342 Pfam Helix-loop-helix DNA-binding domain 113 159 IPR011598 GO:0046983
Trre10g00821 342 Coils Coil 148 168 - -
Trre10g00821 342 MobiDBLite consensus disorder prediction 245 266 - -
Trre10g00821 342 MobiDBLite consensus disorder prediction 43 65 - -
Trre10g00821 342 FunFam Basic helix-loop-helix transcription factor 104 167 - -
Trre10g00821 342 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 9 290 IPR031066 -
Trre10g00821 342 MobiDBLite consensus disorder prediction 92 121 - -
Trre10g00821 342 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 109 158 IPR011598 GO:0046983
Trre10g00821 342 MobiDBLite consensus disorder prediction 107 121 - -
Trre10g00821 342 MobiDBLite consensus disorder prediction 43 79 - -
Trre10g00821 342 SMART finulus 115 164 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g00821 Trre-Chr10 6257297 6260098 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g00821 74 252 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G36930 53.846 3.95e-47 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre10g00821 HLH 3.7e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g00821 - - vum:124831111 360.147