Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g00811 ATGTGGGATCTGAATGACTCACCTGATCAGAGAAAGGATTATGAATCAGAAGCAGAAGGTTGTTCAATCGACGGTGATGAAGTTGATGAAAAAGGTAAAAGAGTTGGATCTGTTTCAAATATTTCAAATTCAAGTTCATCTGCTATTGTTATAGAAGATGGATCCGAAGATGAAGACGGTAACGGTAACGGATTATTGAAGAAAAAAAGTAGTAAGATATTTGGATTCTCAGTCGATGACGATGAAGACGATAGTGAGTGTCCACCGGTGACTAGACAGTTTTTTCCGGTAGAAGATACTGAGATGACAGCGGTGGTGGATTCTACTTCCGGTGGTAGTGGTGGTGGTGGTGGAGGTGGAGGTTCTTCTTCTTCTTTTCCACGTGCTCACTGGGTAGGTGTAAGATTTTGTCAATCGGAAACGGTTAACGGTGGTAAATCAATTGAAAATTCTGTTTCGCAACCGACGAAGAAGAGTCGTAGAGGACCAAGGTCTAGAAGTTCACAGTATAGAGGTGTTACTTTTTACAGAAGAACTGGTCGATGGGAATCTCATATTTGGGATTGTGGAAAACAAGTGTATTTGGGTGGATTTGACACAGCACATGCAGCTGCACGAGCATATGATAGAGCGGCAATTAAGTTTAGAGGAGTAGAAGCAGACATAAACTTCAACATTGAAGATTATGAAGAGGACTTAAAGCAGATGAGCAATTTAACTAAGGAAGAGTTTGTGCACGTACTTCGGCGACAAAGTACTGGATTTCCAAGAGGAAGTTCTAAATATAGAGGTGTAACTTTGCACAAATGTGGAAGATGGGAGGCCAGAATGGGTCAATTCTTAGGGAAAAAGTACGTTTATCTGGGTCTATTTGATTCCGAGGTTGAAGCTGCAAGGGCTTATGATAAAGCAGCAATTAAATGCAATGGTAAAGAGGCTGTGACCAATTTTGATCCTAGCATCTATGATAATGAGCTTAATTCTGAATCCTCAGGTCATGCTACCGCGGATCACAATTTGGATTTGAGTTTGGGCAGTTCAAGTTCTAAATGTAAAAATAATCAAGCAATTGGGAATCACAATACAAATGTCGCCACTGATCAGTATATGGCGCCTGAACCAAATTGGCGGAACGGTGGAATCAGGCCTAAGCCGGTGAATATTTTACCAAAACCATGTGGTATGAGTAACATGGAAGCTTATGTAAGGGATGGATATGGAGAGAATGAAACCTTGAGGATGTTAAGCCAAACTCATCTTCAATTTCCTGTCACTAATGAAATGCATAGATATGGTCCCTACAGATCACCTGTTGAACACCACCACCCTCAAATGCTTCACAGTTTTCAACATCTTCACCCCTCAAATTTTCATGTATCGAGCAGCAGCAGCAATGGAGGCCGAATTGGAAGTGATTTAATGTTATCAATGTCCGATCAACAAAAGTGGCAAACGGGGCCTCCACATTTGTTAGCAACTGCTGCAGCATCATCAGGATTCCCACCTCAAATAAGACCCTCTTCTTCTTCTTCTCAAGGTTGGCTGCAGAAAAATGGTTTCCACACTCTCATGAGACCCTCTTGA 1584 0.416 MWDLNDSPDQRKDYESEAEGCSIDGDEVDEKGKRVGSVSNISNSSSSAIVIEDGSEDEDGNGNGLLKKKSSKIFGFSVDDDEDDSECPPVTRQFFPVEDTEMTAVVDSTSGGSGGGGGGGGSSSSFPRAHWVGVRFCQSETVNGGKSIENSVSQPTKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFNIEDYEEDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDSEVEAARAYDKAAIKCNGKEAVTNFDPSIYDNELNSESSGHATADHNLDLSLGSSSSKCKNNQAIGNHNTNVATDQYMAPEPNWRNGGIRPKPVNILPKPCGMSNMEAYVRDGYGENETLRMLSQTHLQFPVTNEMHRYGPYRSPVEHHHPQMLHSFQHLHPSNFHVSSSSSNGGRIGSDLMLSMSDQQKWQTGPPHLLATAAASSGFPPQIRPSSSSSQGWLQKNGFHTLMRPS 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g00811 527 FunFam AP2-like ethylene-responsive transcription factor 168 227 - -
Trre10g00811 527 SUPERFAMILY DNA-binding domain 168 226 IPR016177 GO:0003677
Trre10g00811 527 MobiDBLite consensus disorder prediction 36 51 - -
Trre10g00811 527 Pfam AP2 domain 260 309 IPR001471 GO:0003700|GO:0006355
Trre10g00811 527 Pfam AP2 domain 169 217 IPR001471 GO:0003700|GO:0006355
Trre10g00811 527 MobiDBLite consensus disorder prediction 1 34 - -
Trre10g00811 527 Gene3D AP2/ERF domain 260 319 IPR036955 GO:0003700|GO:0006355
Trre10g00811 527 Gene3D AP2/ERF domain 168 227 IPR036955 GO:0003700|GO:0006355
Trre10g00811 527 MobiDBLite consensus disorder prediction 144 158 - -
Trre10g00811 527 ProSiteProfiles AP2/ERF domain profile. 169 225 IPR001471 GO:0003700|GO:0006355
Trre10g00811 527 SMART rav1_2 261 324 IPR001471 GO:0003700|GO:0006355
Trre10g00811 527 SMART rav1_2 169 231 IPR001471 GO:0003700|GO:0006355
Trre10g00811 527 FunFam AP2-like ethylene-responsive transcription factor 260 320 - -
Trre10g00811 527 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 88 423 - -
Trre10g00811 527 CDD AP2 260 320 IPR001471 GO:0003700|GO:0006355
Trre10g00811 527 MobiDBLite consensus disorder prediction 144 170 - -
Trre10g00811 527 ProSiteProfiles AP2/ERF domain profile. 261 318 IPR001471 GO:0003700|GO:0006355
Trre10g00811 527 SUPERFAMILY DNA-binding domain 260 320 IPR016177 GO:0003677
Trre10g00811 527 PRINTS Ethylene responsive element binding protein signature 300 320 IPR001471 GO:0003700|GO:0006355
Trre10g00811 527 PRINTS Ethylene responsive element binding protein signature 262 273 IPR001471 GO:0003700|GO:0006355
Trre10g00811 527 MobiDBLite consensus disorder prediction 500 518 - -
Trre10g00811 527 MobiDBLite consensus disorder prediction 498 527 - -
Trre10g00811 527 MobiDBLite consensus disorder prediction 1 67 - -
Trre10g00811 527 CDD AP2 169 226 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g00811 Trre-Chr10 6174578 6177688 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g00811 1 357 AP2-EREBP Transcription Factor Family AT4G36920 65.395 1.56e-133 393
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Trre10g00811 AP2 2.2e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g00811 K09284 - gmx:100786333 756.518