Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g00810 ATGTGGGATCTGAATGACTCACCTGATCAGAGAAAGGATTATGAATCAGAAGCAGAAGGTTGTTCAATCGACGGTGATGAAGTTGATGAAAAAGGTAAAAGAGTTGGATCTGTTTCAAATATTTCAAATTCAAGTTCATCTGCTATTGTTATAGAAGATGGATCCGAAGATGAAGACGGTAACGGTAACGGATTATTGAAGAAAAAAAGTAGTAAGATATTTGGATTCTCAGTCGATGACGATGAAGACGATAGTGAGTGTCCACCGGTGACTAGACAGTTTTTTCCGGTAGAAGATACTGAGATGACAGCGGTGGTGGATTCTACTTCCGGTGGTAGTGGTGGTGGTGGTGGAGGTGGAGGTTCTTCTTCTTCTTTTCCACGTGCTCACTGGGTAGGTGTAAGATTTTGTCAATCGGAAACGGTTAACGGTGGTAAATCAATTGAAAATTCTGTTTCGCAACCGACGAAGAAGAGTCGTAGAGGACCAAGGTCTAGAAGTTCACAGTATAGAGGTGTTACTTTTTACAGAAGAACTGGTCGATGGGAATCTCATATTTGGGATTGTGGAAAACAAGTGTATTTGGGTGGATTTGACACAGCACATGCAGCTGCACGAGCATATGATAGAGCGGCAATTAAGTTTAGAGGAGTAGAAGCAGACATAAACTTCAACATTGAAGATTATGAAGAGGACTTAAAGCAGATGAGCAATTTAACTAAGGAAGAGTTTGTGCACGTACTTCGGCGACAAAGTACTGGATTTCCAAGAGGAAGTTCTAAATATAGAGGTGTAACTTTGCACAAATGTGGAAGATGGGAGGCCAGAATGGGTCAATTCTTAGGGAAAAATCTGATTCGATTTACCAGGTACGTTTATCTGGGTCTATTTGATTCCGAGGTTGAAGCTGCAAGGGCTTATGATAAAGCAGCAATTAAATGCAATGGTAAAGAGGCTGTGACCAATTTTGATCCTAGCATCTATGATAATGAGCTTAATTCTGAATCCTCAGGTCATGCTACCGCGGATCACAATTTGGATTTGAGTTTGGGCAGTTCAAGTTCTAAATGTAAAAATAATCAAGCAATTGGGAATCACAATACAAATGTCGCCACTGATCAGTATATGGCGCCTGAACCAAATTGGCGGAACGGTGGAATCAGGCCTAAGCCGGTGAATATTTTACCAAAACCATGTGGTATGAGTAACATGGAAGCTTATGTAAGGGATGGATATGGAGAGAATGAAACCTTGAGGATGTTAAGCCAAACTCATCTTCAATTTCCTGTCACTAATGAAATGCATAGATATGGTCCCTACAGATCACCTGTTGAACACCACCACCCTCAAATGCTTCACAGTTTTCAACATCTTCACCCCTCAAATTTTCATGTATCGAGCAGCAGCAGCAATGGAGGCCGAATTGGAAGTGATTTAATGTTATCAATGTCCGATCAACAAAAGTGGCAAACGGGGCCTCCACATTTGTTAGCAACTGCTGCAGCATCATCAGGATTCCCACCTCAAATAAGACCCTCTTCTTCTTCTTCTCAAGGTTGGCTGCAGAAAAATGGTTTCCACACTCTCATGAGACCCTCTTGA 1602 0.4157 MWDLNDSPDQRKDYESEAEGCSIDGDEVDEKGKRVGSVSNISNSSSSAIVIEDGSEDEDGNGNGLLKKKSSKIFGFSVDDDEDDSECPPVTRQFFPVEDTEMTAVVDSTSGGSGGGGGGGGSSSSFPRAHWVGVRFCQSETVNGGKSIENSVSQPTKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFNIEDYEEDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKNLIRFTRYVYLGLFDSEVEAARAYDKAAIKCNGKEAVTNFDPSIYDNELNSESSGHATADHNLDLSLGSSSSKCKNNQAIGNHNTNVATDQYMAPEPNWRNGGIRPKPVNILPKPCGMSNMEAYVRDGYGENETLRMLSQTHLQFPVTNEMHRYGPYRSPVEHHHPQMLHSFQHLHPSNFHVSSSSSNGGRIGSDLMLSMSDQQKWQTGPPHLLATAAASSGFPPQIRPSSSSSQGWLQKNGFHTLMRPS 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g00810 533 SUPERFAMILY DNA-binding domain 260 326 IPR016177 GO:0003677
Trre10g00810 533 SUPERFAMILY DNA-binding domain 168 226 IPR016177 GO:0003677
Trre10g00810 533 PRINTS Ethylene responsive element binding protein signature 262 273 IPR001471 GO:0003700|GO:0006355
Trre10g00810 533 PRINTS Ethylene responsive element binding protein signature 306 326 IPR001471 GO:0003700|GO:0006355
Trre10g00810 533 CDD AP2 260 326 IPR001471 GO:0003700|GO:0006355
Trre10g00810 533 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 88 429 - -
Trre10g00810 533 MobiDBLite consensus disorder prediction 36 51 - -
Trre10g00810 533 MobiDBLite consensus disorder prediction 1 34 - -
Trre10g00810 533 MobiDBLite consensus disorder prediction 506 524 - -
Trre10g00810 533 MobiDBLite consensus disorder prediction 504 533 - -
Trre10g00810 533 MobiDBLite consensus disorder prediction 144 158 - -
Trre10g00810 533 SMART rav1_2 169 231 IPR001471 GO:0003700|GO:0006355
Trre10g00810 533 SMART rav1_2 261 330 IPR001471 GO:0003700|GO:0006355
Trre10g00810 533 Gene3D AP2/ERF domain 168 227 IPR036955 GO:0003700|GO:0006355
Trre10g00810 533 Gene3D AP2/ERF domain 260 325 IPR036955 GO:0003700|GO:0006355
Trre10g00810 533 ProSiteProfiles AP2/ERF domain profile. 169 225 IPR001471 GO:0003700|GO:0006355
Trre10g00810 533 MobiDBLite consensus disorder prediction 144 170 - -
Trre10g00810 533 FunFam AP2-like ethylene-responsive transcription factor 168 227 - -
Trre10g00810 533 MobiDBLite consensus disorder prediction 1 67 - -
Trre10g00810 533 Pfam AP2 domain 260 315 IPR001471 GO:0003700|GO:0006355
Trre10g00810 533 Pfam AP2 domain 169 217 IPR001471 GO:0003700|GO:0006355
Trre10g00810 533 CDD AP2 169 226 IPR001471 GO:0003700|GO:0006355
Trre10g00810 533 ProSiteProfiles AP2/ERF domain profile. 261 324 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g00810 Trre-Chr10 6174578 6177688 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g00810 1 363 AP2-EREBP Transcription Factor Family AT4G36920 64.075 1.82e-130 385
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Trre10g00810 AP2 2.2e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g00810 K09284 - gmx:100786333 748.814