Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g00807 ATGGAAGGTGAAAGAGGAAAAGGAGAGAGAAAGAGAAACGGTGGTGTTGTAGTTGAAGGTGGTGGTGGTGGTGGTGGTGCAGTAGCAGCAGCAGAGAGAAGATACAAAGGAATTCGTATGAGAAAGTGGGGTAAATGGGTAGCTGAAATTAGAGAACCAAATAAACGTTCTCGTATTTGGTTAGGTTCTTATTCTACACCTATCGCCGCCGCTAGAGCTTACGACACCGCCGTTTTCTATCTCCGTGGACCTTCTGCTCGTCTTAATTTCCCTGAATTACTCGCCGGCGAAAACAACAACAACAACAACGCTGTTGTTACTTCTGATTTATCCGCCGCTTCAATTCGTAAAAAAGCTACTGAAGTTGGTGCTAGGGTTGATGCTCTACAAGCTACTCTTCATCATCACCATCATAATCATAATCACAACCACCGTGTTACACCGCCGCCGCCGGAGTTAATTAACGGTGGCGGTGGTGGTTCTGGTGATTTTGCGGAGCGGGTTGATTTGAATAAGATTCCTGAACCGGAGAGTTCGGATTGTGAATGGGAAGTTAATTTAGTAAGAAAATTGTGA 576 0.4514 MEGERGKGERKRNGGVVVEGGGGGGGAVAAAERRYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPIAAARAYDTAVFYLRGPSARLNFPELLAGENNNNNNAVVTSDLSAASIRKKATEVGARVDALQATLHHHHHNHNHNHRVTPPPPELINGGGGGSGDFAERVDLNKIPEPESSDCEWEVNLVRKL 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g00807 191 PRINTS Ethylene responsive element binding protein signature 73 93 IPR001471 GO:0003700|GO:0006355
Trre10g00807 191 PRINTS Ethylene responsive element binding protein signature 35 46 IPR001471 GO:0003700|GO:0006355
Trre10g00807 191 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 29 180 - -
Trre10g00807 191 FunFam Ethylene-responsive transcription factor 2 33 92 - -
Trre10g00807 191 ProSiteProfiles AP2/ERF domain profile. 34 91 IPR001471 GO:0003700|GO:0006355
Trre10g00807 191 Gene3D AP2/ERF domain 33 92 IPR036955 GO:0003700|GO:0006355
Trre10g00807 191 SMART rav1_2 34 97 IPR001471 GO:0003700|GO:0006355
Trre10g00807 191 CDD AP2 34 93 IPR001471 GO:0003700|GO:0006355
Trre10g00807 191 SUPERFAMILY DNA-binding domain 34 92 IPR016177 GO:0003677
Trre10g00807 191 Pfam AP2 domain 34 83 IPR001471 GO:0003700|GO:0006355
Trre10g00807 191 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g00807 Trre-Chr10 6134594 6135169 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g00807 18 184 AP2-EREBP Transcription Factor Family AT5G67190 55.615 7.24e-59 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre10g00807 AP2 5.2e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g00807 K09286 - gmx:100527066 223.016