Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g00796 ATGATATGTAGTCTTCTTTTGTTTCTTAAGTTCTTCGCCACTCCTGAGGAAGCCATTGATTACTTTAACCAGAAAAGATGTGTAGATGGAAAGGCTCTAGTTCTCCCTAGTCAGATTAGATATGTCAAATACTTTGAAAGGACTTTAACACACTTCAATGGAGAAGTCCAGCCTGGACGAAGGTGCATGCTAAGAGGATTCCGGCTGCGCAAATGCCCTTATTGGGTTAGGCCATCCATTACAATTTCTGATCATAGTGGAATTCTTTTCACAACGAGAAAGCATCCCAAAACAAAAGATCTAATGCCTGAAGATTTCTGGATCAATGCACCGAAGAAAGGAATTGTGGTCTTTGCATTACCAGGGGAGCCTGGTCTGGCAGAATTGGTTGGGGACTTCAAAATTCATTTTCATGACCGACAGGGAGATTTCTTCTGTTGGATGAATACAACATTGATAGAGAACAGAACAATTTTAGATGGCTCAGATCTTGATGATTTTGACAAGAGAAAGATCCCCGCTCCAGGGTTCCAGGTCGAAGTTGTGATGGTAGATTATAATGGCACCCTGCCTACTAAAGTCAATCCTGCAAGCAAAGGATCTGGCAACACAAGCAATGTCTTATCCGGTGCAAAGCCTACATCTAATTCAAGCGAGAGTAAGGTACCTAAAAATGGAGATGATGTATTCTCAGATAGTGACGAGGAGGAGACCAAGGGAACAAAAATGAGGGAAGCTGCAACTAATTACAAGTATATGGAACCACATCAAGTATCTGAGGCCACTACTGACCATGTAGGGATGTTGGCACATGCAACGGATCGGTTGTCACTCCAGCATGAGGAACATACAGAAAACAATGCTTCTGAAGCATCAACTACAGATAAACTTCATAGTACTCATGCAGACCCTAACACAACCAACATGGAATCTGTAGGGTCAAGTGAATTCAAGGCAATTGCAGCAGATGCTTCAGTTTTTTCTTTTGGAGATGAAGATTTTGAGAGTGATTAA 1014 0.4181 MICSLLLFLKFFATPEEAIDYFNQKRCVDGKALVLPSQIRYVKYFERTLTHFNGEVQPGRRCMLRGFRLRKCPYWVRPSITISDHSGILFTTRKHPKTKDLMPEDFWINAPKKGIVVFALPGEPGLAELVGDFKIHFHDRQGDFFCWMNTTLIENRTILDGSDLDDFDKRKIPAPGFQVEVVMVDYNGTLPTKVNPASKGSGNTSNVLSGAKPTSNSSESKVPKNGDDVFSDSDEEETKGTKMREAATNYKYMEPHQVSEATTDHVGMLAHATDRLSLQHEEHTENNASEASTTDKLHSTHADPNTTNMESVGSSEFKAIAADASVFSFGDEDFESD 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g00796 337 MobiDBLite consensus disorder prediction 192 224 - -
Trre10g00796 337 MobiDBLite consensus disorder prediction 281 314 - -
Trre10g00796 337 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 1 301 - -
Trre10g00796 337 Gene3D Protein tyrosine phosphatase superfamily 1 58 IPR029021 -
Trre10g00796 337 MobiDBLite consensus disorder prediction 290 314 - -
Trre10g00796 337 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 1 49 IPR029021 -
Trre10g00796 337 MobiDBLite consensus disorder prediction 225 244 - -
Trre10g00796 337 MobiDBLite consensus disorder prediction 192 248 - -
Trre10g00796 337 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 129 183 IPR035892 -
Trre10g00796 337 ProSiteProfiles C2 tensin-type domain profile. 59 186 IPR014020 -
Trre10g00796 337 SMART PTEN_C2_2 57 185 IPR014020 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g00796 Trre-Chr10 6038565 6040512 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g00796 1 337 Protein tyrosine phosphatase (PTP) family AT3G19420 56.897 1.99e-138 404
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g00796 K01110 - gmx:100801622 561.222