Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g00786 ATGGATCGGATCAAAGGTCCATGGAGTCCTGAAGAAGATGAAGCACTTCAAAAGCTTGTTGAAAAACACGGTCCGAGAAACTGGTCGATTATAAGTAAATCGATTCCAGGCAGGTCTGGGAAATCGTGCAGGCTTCGTTGGTGTAATCAGCTTTCACCACAAGTTGAACATCGGGCTTTTACACCTGAAGAAGATGATACTATAATCAGAGCCCATGCTCGATTTGGAAATAAATGGGCCACGATTGCTAGGCTTTTATCGGGCCGAACTGATAACGCTATTAAAAATCACTGGAACTCTACTTTGAAACGTAAGTGTTGTTCTAGTATGATGATTGATGAATCTCCACCGTTGAAAAGATCTGTTAGTGCTGGTGCTGCTATGCCTGTTTCTACTGGTCTTTATATTAACCCTCCTTCTTCACCTTGTTCACCCTGTTCTCCTTCTGGATCCGATGTGAGCGAGTCTAGCGTACCTATTGTGAACACTTCTCATGTTTACCGTCCGGTGCCGACGAGAACTGTTACAGTTCCGGTTACGGTTCTACCTCCTGTAGAAACGACGTCGTCTTCTAAATCTTCTAAATCTCCAAAATCAAATGATCCTCCAACATCATTATCACTTTCACTTCCCGGAGTAGATTCTTCGTCGGAAGATTCAAACCGTATGACTGAGCCGCCTGTTAAGAACTCTGCTCCACCGTCTCCTCCACCACCACTGCCAAGTGCAATTCCTTTGATTCCGATAATGACTGCAGCTGTTCCTGTTTCTGTTCCGATGGCGGTTCCAATGATGCAGCAATTTAACGATCCAGCGGCGGCAACGGCGAGAGGATCGGCGATGCCGTTCAATTTTAGTGCGGAGTTGTTGACTGTGATGCAGGAAATGATAAGGACGGAGGTGAGGAGTTACATGGCAGGATTGGAGCAGCAGAATGGAATGTGTATTTCTGATGATGGATTTAGGAATGCTTCTGTGAAGAGAATTGGAATTAGCAGGATCGATTCGTAA 1011 0.452 MDRIKGPWSPEEDEALQKLVEKHGPRNWSIISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDDTIIRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCCSSMMIDESPPLKRSVSAGAAMPVSTGLYINPPSSPCSPCSPSGSDVSESSVPIVNTSHVYRPVPTRTVTVPVTVLPPVETTSSSKSSKSPKSNDPPTSLSLSLPGVDSSSEDSNRMTEPPVKNSAPPSPPPPLPSAIPLIPIMTAAVPVSVPMAVPMMQQFNDPAAATARGSAMPFNFSAELLTVMQEMIRTEVRSYMAGLEQQNGMCISDDGFRNASVKRIGISRIDS 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g00786 336 FunFam Transcription factor MYB44 59 105 - -
Trre10g00786 336 Gene3D - 58 121 - -
Trre10g00786 336 PANTHER MYB PROTEIN-RELATED 5 200 - -
Trre10g00786 336 CDD SANT 7 49 IPR001005 -
Trre10g00786 336 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 55 IPR017930 -
Trre10g00786 336 SMART sant 56 104 IPR001005 -
Trre10g00786 336 SMART sant 4 53 IPR001005 -
Trre10g00786 336 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 57 106 IPR017930 -
Trre10g00786 336 MobiDBLite consensus disorder prediction 184 239 - -
Trre10g00786 336 CDD SANT 59 102 IPR001005 -
Trre10g00786 336 Gene3D - 4 56 - -
Trre10g00786 336 ProSiteProfiles Myb-like domain profile. 1 51 IPR001005 -
Trre10g00786 336 MobiDBLite consensus disorder prediction 184 228 - -
Trre10g00786 336 FunFam MYB transcription factor 5 56 - -
Trre10g00786 336 ProSiteProfiles Myb-like domain profile. 52 102 IPR001005 -
Trre10g00786 336 SUPERFAMILY Homeodomain-like 2 98 IPR009057 -
Trre10g00786 336 Pfam Myb-like DNA-binding domain 8 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g00786 Trre-Chr10 5978006 5979016 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g00786 1 335 MYB Transcription Factor Family AT4G37260 46.849 1.44e-95 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre10g00786 Myb_DNA-bind_6 3.8e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g00786 K09422 - gmx:780556 387.111