Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g00771 ATGTCTCATCGACAAAACCAAAACCAACAACCACTTTTAGAACAATACGAAGAAGAAGAAACCGCTTATGATTCATCGGAGAAGATAGTTATTGTAGGAGACGAAGAATACGAAGCTGACGTGGACGCCGGAGTACGAATTCCACCGTTTTCATGGAAAAAACTATGGTTATTCAGTGGTCCAGGTTTTCTAATGAGTATAGCTTTTCTCGATCCTGGAAACTTGGAAGGAGATCTTCAATCTGGTGCAATTGCTGGATACTCATTGTTATGGCTTCTTATGTGGGCTACAGCTATGGGGCTTCTTATTCAGTTATTGTCAGCAAGGTTAGGTGTTGCTACTGGAAGACATTTGGCTGAACTTTGTAGAGATGAGTATCCTACTTGGGCTAGGATTGTGTTGTGGTTGATGACTGAAGTTGCGCTTATTGGTTCTGATATTCAAGAGGTTATTGGTAGTGCTATTGCTATTAGGATTTTGAGTAATGGTTATGTTCCTCTTTGGGCTGGTGTTGTTATTACTGCTTTAGATTGTTTCATTTTTCTCTTTCTTGAGAACTATGGTGTGAGAAAATTGGAAGCATTTTTCGCCGTACTGATTGCTATAATGGCTCTCTCATTTGCATGGATGTTTGGTGAAGCAAAGCCTGATGGTGTTGATGTTCTTGTTGGTATTTTGGTTCCTAAACTTAGTTCCAGAACTATACAACAAGCTGTTGGAGTTGTTGGTTGCATTATTATGCCTCACAATGTATTCTTGCATTCTGCTCTTGTTCAATCAAGACAGGTTGACACGAAAAAGAAAGGCCGTGTTCAAGAAGCTCTTAATTACTACTCAATAGAGTCCACCATTGCGCTTGTTGTTTCCTTTGTCATTAATATATTTGTCACAACTGTGTTTGCTAAGGGCTTTTATGGTACTGAAATAGCGAATAGGATCGGTCTCGTAAATGCAGGGCAGTACCTTCAAGAGAAGTATGGAGGTGGAGTATTCCCAATCTTGTATATATGGGGTATTGGGTTATTAGCAGCTGGTCAGAGTAGCACTATTACTGGTACATATGCTGGACAATTCATCATGGGGGGTTTTCTGAATTTGAAGTTGAAAAAATGGATGAGGGCGTTGATTACACGGAGCTTTGCAATCGTCCCGACTATGATAGTTGCACTTATATTTGATACCTCAGAGGACTCATTAGATGTTCTGAATGAATGGCTTAATGTTCTTCAGTCAGTGCAAATTCCCTTTGCACTGATTCCCTTGCTTTGTTTGGTATCGAAGGAACAAATAATGGGCACTTTCAAGATCGGCTCTGTCCTCAAGACCATTTCCTGGCTTGTGGCTGCACTGGTGATAGTGATAAATGGCTATCTTTTGCTGGAATTCTTTTCATCTGAAGTGAGTGGAGCAGTGGTAACCGCTATTGTGTCTGCAATAACTGCTGCATACGTTGCATTCATAGTTTACCTCATTTCAAGTGCCTTTGCATTTACACCATGGCAAAGTTTTACTCGGTCAAAGACAGTAGCTTCCACGGAGAGTTGA 1545 0.4065 MSHRQNQNQQPLLEQYEEEETAYDSSEKIVIVGDEEYEADVDAGVRIPPFSWKKLWLFSGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATAMGLLIQLLSARLGVATGRHLAELCRDEYPTWARIVLWLMTEVALIGSDIQEVIGSAIAIRILSNGYVPLWAGVVITALDCFIFLFLENYGVRKLEAFFAVLIAIMALSFAWMFGEAKPDGVDVLVGILVPKLSSRTIQQAVGVVGCIIMPHNVFLHSALVQSRQVDTKKKGRVQEALNYYSIESTIALVVSFVINIFVTTVFAKGFYGTEIANRIGLVNAGQYLQEKYGGGVFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLKLKKWMRALITRSFAIVPTMIVALIFDTSEDSLDVLNEWLNVLQSVQIPFALIPLLCLVSKEQIMGTFKIGSVLKTISWLVAALVIVINGYLLLEFFSSEVSGAVVTAIVSAITAAYVAFIVYLISSAFAFTPWQSFTRSKTVASTES 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g00771 514 MobiDBLite consensus disorder prediction 1 21 - -
Trre10g00771 514 Pfam Natural resistance-associated macrophage protein 76 437 IPR001046 GO:0016020|GO:0030001|GO:0046873
Trre10g00771 514 MobiDBLite consensus disorder prediction 1 15 - -
Trre10g00771 514 NCBIfam metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 53 431 IPR001046 GO:0016020|GO:0030001|GO:0046873
Trre10g00771 514 NCBIfam Nramp family divalent metal transporter 60 429 - -
Trre10g00771 514 PRINTS Natural resistance-associated macrophage protein signature 373 390 IPR001046 GO:0016020|GO:0030001|GO:0046873
Trre10g00771 514 PRINTS Natural resistance-associated macrophage protein signature 407 426 IPR001046 GO:0016020|GO:0030001|GO:0046873
Trre10g00771 514 PRINTS Natural resistance-associated macrophage protein signature 164 183 IPR001046 GO:0016020|GO:0030001|GO:0046873
Trre10g00771 514 PRINTS Natural resistance-associated macrophage protein signature 345 364 IPR001046 GO:0016020|GO:0030001|GO:0046873
Trre10g00771 514 PRINTS Natural resistance-associated macrophage protein signature 238 261 IPR001046 GO:0016020|GO:0030001|GO:0046873
Trre10g00771 514 PRINTS Natural resistance-associated macrophage protein signature 189 210 IPR001046 GO:0016020|GO:0030001|GO:0046873
Trre10g00771 514 PRINTS Natural resistance-associated macrophage protein signature 134 160 IPR001046 GO:0016020|GO:0030001|GO:0046873
Trre10g00771 514 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 34 494 IPR001046 GO:0016020|GO:0030001|GO:0046873
Trre10g00771 514 Hamap Divalent metal cation transporter MntH [mntH]. 41 463 IPR001046 GO:0016020|GO:0030001|GO:0046873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g00771 Trre-Chr10 5815051 5818232 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g00771 5 500 Inorganic Solute Cotransporters AT2G23150 80.800 0.0 801
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g00771 K21398 - gmx:100807811 877.085