Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g00759 ATGACTAATCTCGCTGGTTACATCACCACTAATCAGAGACCAATTTCTCTGATATCAATTATGCCAAAAACCACCGTTCCGTCGCGCTACGTCGTCGTTTTCACGTTTCGAAGTTCCCAAAAACATGGATTCAGTACCTCTTCTGAATCAGTTTGGACAGATTATCCCATAGAGAACGCGTACGAGCTTCTAGAAGTATCGGAAACAAGCTCATTCGATGAGATCAAAGCCTCGTTTCGTAAATTGGCGAAAGAAACTCACCCTGACCTCGCTGAGTCAAGGAACGATTCCACTGCTTCACGACGATTTGTTCAAATTCTTGCTGCATATGAGATTCTTTCAGATGCTCAGAAGAGATCCCATTATGACATGTACTTGTTATATCAGAAAAAGCTTATGCAGAAGCATTCTGAACAGGGTTCAAAATTGCGCATTTATGAATCACAGGCCACAACATTCAATGAGATGGAAGTTGTTGAATGGTTAAAGTGGTACAGATTAGCTATAAATGATATTTTGTCAGAGAAGAAAGTGGTGGTTGGAACAGGATATTTTGATGTACTCGAAAGAGATTTTTATTCTGCTATTCATGCAGCATACTATGGTCCCGAAATTGATTCTATCCCCATGGAGTTTCTTCCCGACTGCTTTGAGGCTGAGGAGAGGTCCTCTTATGAAACTCCTGAGGTTTTGCACTTGGTTTCCGGCCGTGATCTTTTTGGGATAGTTTGCTTAGTCAACAAGATTCCAGAGATACCATCTACTGAAAATGAAAAGTTAACTTCTTATAGACCCTTCCATTCAGGCCTTTGTCAATCTCTAACGGATGTGGACACCTGCAGAAATGTAGAAAGCCCAGATAATTTTGTAACACAACAAAGCCGCAGCTCTAAAATTTCAAATAATGTTTCAGATGCGTATAGAGATCTAGAATTGCATGTCTCTGGAAAATTAGTTGCTACAGCATCTAGGGTCCTACCTAGATGTGGTTCTGATGCGATGCAAAAGGAAGATGCTGAAGATCACATTCATGTGTTCCTTAATTCAGATGAAGATCCCAGACATATCAGCAGTGGCTTTTCAAGAAATTTATATGTAAATAGCACAGTTGGAAGAAAAATGCATTTGGGAACCATATCTGGACTTGGGAGCAGTCCAGACGAAGGATGTTGTTATGTCTACAACAGCAGTTGTGAAAAAACCCATGTGATTATGAAACACAGAACATTGTTGGTGAAGCATATGCACTGGTATCATGTGGGTGAGAAAGTTTCAGTTTGTGAGTGTAGATGCACCAGAGCACGTTTACCACCAAGCAAATTTTGGCTATTTGAGCCTCGCTGTGGCTTCCATGACATAGGGGGTTGGTATGTGGAAACATATGGCAAAGATAAGAAGGGTCGTACTATGCCATCACAAAGGTTCTGGGATGGCTTGGATTATAGCCAGCAAACTGAAAGAAGACTTCATCCAGCAATGTATCTGTTTGCTCTTGCATATCGAACACTTGATCTTGAATATGCCAAAACAAGCAAGAAAACATTTACGGATGCCGTTGGAGCACATATGTTCCGAATTCTTCACTGGTGCAAGAAACTTGCTAAATAG 1608 0.4092 MTNLAGYITTNQRPISLISIMPKTTVPSRYVVVFTFRSSQKHGFSTSSESVWTDYPIENAYELLEVSETSSFDEIKASFRKLAKETHPDLAESRNDSTASRRFVQILAAYEILSDAQKRSHYDMYLLYQKKLMQKHSEQGSKLRIYESQATTFNEMEVVEWLKWYRLAINDILSEKKVVVGTGYFDVLERDFYSAIHAAYYGPEIDSIPMEFLPDCFEAEERSSYETPEVLHLVSGRDLFGIVCLVNKIPEIPSTENEKLTSYRPFHSGLCQSLTDVDTCRNVESPDNFVTQQSRSSKISNNVSDAYRDLELHVSGKLVATASRVLPRCGSDAMQKEDAEDHIHVFLNSDEDPRHISSGFSRNLYVNSTVGRKMHLGTISGLGSSPDEGCCYVYNSSCEKTHVIMKHRTLLVKHMHWYHVGEKVSVCECRCTRARLPPSKFWLFEPRCGFHDIGGWYVETYGKDKKGRTMPSQRFWDGLDYSQQTERRLHPAMYLFALAYRTLDLEYAKTSKKTFTDAVGAHMFRILHWCKKLAK 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g00759 535 ProSiteProfiles dnaJ domain profile. 59 126 IPR001623 -
Trre10g00759 535 ProSitePatterns Nt-dnaJ domain signature. 103 122 IPR018253 -
Trre10g00759 535 Pfam DnaJ domain 59 123 IPR001623 -
Trre10g00759 535 CDD DnaJ 59 115 IPR001623 -
Trre10g00759 535 Gene3D DnaJ domain 52 146 IPR036869 -
Trre10g00759 535 PRINTS DnaJ domain signature 61 79 IPR001623 -
Trre10g00759 535 PRINTS DnaJ domain signature 79 94 IPR001623 -
Trre10g00759 535 PRINTS DnaJ domain signature 98 118 IPR001623 -
Trre10g00759 535 SUPERFAMILY Chaperone J-domain 56 129 IPR036869 -
Trre10g00759 535 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 23 533 - -
Trre10g00759 535 SMART dnaj_3 58 118 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g00759 Trre-Chr10 5710125 5714350 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g00759 61 125 C2H2 Transcription Factor Family AT1G74250 41.176 3.11e-08 54.3