Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g00748 ATGGAACAACAATCAAATCAAATCCCAATATCTACTACTCCCTGTTCAGAATTTTCCACACCTATTAACTCTCTACAAAACTTCAACAAAACCAATTGCATGGAACAGTTACTCGTTCACTGTGCCATTGCAATTGAAAGCAACAATGCAACACTAGCACAACAAATCCTTTGGGTCCTTAACAACACAACTCCACAAGATGGTGACTCAAATCAACGCCTAGCCGGAAGCTTCATTCGAGCTCTCATAAATGGCGCATCCAAAACCGGTAGCTGCAAAATGCTCGAAGCGGTTACAGAAACCGCAAGTAGTTATAACCGTTGTAACAACCTCGCTATGCAAATCCATAAATTCTCTGCTATTGAATTAGCAAATTTCATTGATTTAACGCCTTGGCATCGTTTCGGTTTCACAGCAGCTAATTCTACAATTTTAGAAGCTACTAAAGGATTTTCAGTTATTCACATTGTTGATTTGAGTTTAACACATTGCATGCAAATTCCTACTCTAATCGATGCCATTGCTAATCGCGATGAAGTTCCTCCTTTAATCAAGCTCACGGTCGCGGACTCTAGGAATATGAATATTATGCCAATTCCACCTTGTTGGGGATAA 615 0.3967 MEQQSNQIPISTTPCSEFSTPINSLQNFNKTNCMEQLLVHCAIAIESNNATLAQQILWVLNNTTPQDGDSNQRLAGSFIRALINGASKTGSCKMLEAVTETASSYNRCNNLAMQIHKFSAIELANFIDLTPWHRFGFTAANSTILEATKGFSVIHIVDLSLTHCMQIPTLIDAIANRDEVPPLIKLTVADSRNMNIMPIPPCWG 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g00748 204 ProSiteProfiles GRAS family profile. 25 204 IPR005202 -
Trre10g00748 204 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 33 191 IPR005202 -
Trre10g00748 204 Pfam GRAS domain family 34 191 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g00748 Trre-Chr10 5627178 5627792 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g00748 16 193 GRAS Transcription Factor Family AT3G49950 54.749 3.34e-59 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Trre10g00748 GRAS 5.2e-36 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g00748 - - mtr:11421838 300.827