Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g00747 ATGAGTTGCAACGGTTGCCGTGTCCTTAGAAAGGGTTGTAGTGAGTCATGTATCTTACGCCCTTGTATTCAATGGATTGATACCCCTGAAGCTCAAGGTAATGCCACTGTCTTTGTAGCCAAATTTTTCGGCCGTGCAGACCTTATGTCTTTCATTTCCAACGTTCCCCAACCACAAAGACCCGCTCTGTTTCAATCTCTGTTGTTTGAAGCGTGTGGACGAACCGTTAACCCCGTTAACGGTGCCGTTGGACTTTTATGGACAGGAAACTGGCACGTGTGCCAGTCGGCGGTTGAAACAGTGCTCCGCGGCGGAACACTGAAACCCATACCGGAGTTTCTCGGTTTAGATGCTCTTACTTCAACCGTTGATGATTCATCCGAAGGGGAAGTCACGTGTAACGACGCGCGGAGGATCCGAGATCCGAGTCCGAGTTTACGGTTCATGAGTTCTGGTGGTAAACGAAAACGATCGGGTGAAGTTGCGAAGGTTCAGGCGACTACTGATCTTAATCTCCGGTTGACGACACAAAACGCGTTGACCAACGGTTGCCGGAATGAAATTCGCCGGCCGGGAACACCGTCGATGAATTCTGAAGAATCTGTGACGACGATGACGACGTGTTTGGAAAGTGGGATCGGAGGTCACTACGTTCATGACGGAGACCGCAAAGTTCTCAACCTTTTTGTTTGA 693 0.4978 MSCNGCRVLRKGCSESCILRPCIQWIDTPEAQGNATVFVAKFFGRADLMSFISNVPQPQRPALFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQSAVETVLRGGTLKPIPEFLGLDALTSTVDDSSEGEVTCNDARRIRDPSPSLRFMSSGGKRKRSGEVAKVQATTDLNLRLTTQNALTNGCRNEIRRPGTPSMNSEESVTTMTTCLESGIGGHYVHDGDRKVLNLFV 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g00747 230 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 213 - -
Trre10g00747 230 Pfam Lateral organ boundaries (LOB) domain 2 100 IPR004883 -
Trre10g00747 230 MobiDBLite consensus disorder prediction 142 161 - -
Trre10g00747 230 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g00747 Trre-Chr10 5618057 5618953 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g00747 1 230 AS2 family AT4G37540 53.815 1.07e-78 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trre10g00747 LOB 1.4e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g00747 - - gmx:100802764 378.637