Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g00742 ATGGCCATTAGGCCTTTCCAATCCACCTTCTCGCTCCATACATTCTTCTCTCTTTTCCGCACTCCTAATCCATTTTCCTCCGCCGCCGCCGCCACCACCACCACCAACTTTCCGCCACCCTTCTCCGTCATCCGCCGCTTCACCGTATCGTCTTCAACTTCATTCTCACGACCTCCTCGCCGCCCCCAACCTCCTCCTCCTCCGCCGCCATCCGACACTCTGGCGCACAAGATCGGAAAAGCTATTCGCCGCCCCGGCGCCGCCTCTAAGGCCAAAGTTTACGCTGATATCAATGTTGTTCGCCCTAAGGAATATTGGGACTATGAATCCCTCGCCGTTCAGTGGGGGGACCAAGATGATTATCAAGTTGTGAGAAAGGTTGGAAGAGGGAAATACAGTGAAGTTTTTGAAGGTGTTCACTGTACGGATAATGAAAAATGCGTAATCAAGATCCTGAAACCTGTGAAGAAGAAGAAGATAAAGAGGGAGATCAAGATATTGCAAAATCTATGTGGAGGGCCCAATATTGTAAAGTTGCTTGACATTGTTAGAGACCCACAATCAAAGACCCCAAGCCTTGTATTTGAACATGTTAATAACATCGATTTTAAAGTGCTCTATCCTCACTTGTCAGATTATGATATTCGATATTATATGTATGAACTTCTAAAGGCATTAGATTATTGCCACTCACAAGGAATCATGCATCGGGATGTAAAGCCACATAATGTAATGATCGACCACGGGCAGCGTAAGCTTCGCCTTATTGACTGGGGACTTGCAGAGTTTTATCATCCTGGGAAAGAATATAATGTCCGCGTTGCCTCAAGATATTTCAAAGGTCCTGAGCTACTCGTTGATCTTCAAGACTATGATTACTCTCTAGATTTATGGTCTCTCGGTTGTATGTTTGCTGGAATTATATTCCGGAAGGAGCCCTTCTTTTATGGACAAGATAACTATGATCAACTAGTGAAAATAGCCAAGGTACTTGGAACAGATGAATTATATGCGTATCTGAACAAGTATCGCATAGAGTTGGATCCGCAGCTCGCAGTGCTTGTTGGGAGGCATGGTCGGAAGCCATGGACAAAGTTTATCACTATGGATAACAAACACTTGGCTGTTCCTGAGGCTATTGACTTTGTTGACAAGTTACTAAAGTATGATCACGAAGAAAGGCCCACTGCAAAAGAAGCTATGGCCCACCCCTACTTCAATCCAGTGAGAAGTGCAGAAAGTAGTAAAACGCGTACACATTGA 1263 0.4497 MAIRPFQSTFSLHTFFSLFRTPNPFSSAAAATTTTNFPPPFSVIRRFTVSSSTSFSRPPRRPQPPPPPPPSDTLAHKIGKAIRRPGAASKAKVYADINVVRPKEYWDYESLAVQWGDQDDYQVVRKVGRGKYSEVFEGVHCTDNEKCVIKILKPVKKKKIKREIKILQNLCGGPNIVKLLDIVRDPQSKTPSLVFEHVNNIDFKVLYPHLSDYDIRYYMYELLKALDYCHSQGIMHRDVKPHNVMIDHGQRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSLDLWSLGCMFAGIIFRKEPFFYGQDNYDQLVKIAKVLGTDELYAYLNKYRIELDPQLAVLVGRHGRKPWTKFITMDNKHLAVPEAIDFVDKLLKYDHEERPTAKEAMAHPYFNPVRSAESSKTRTH 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g00742 420 SUPERFAMILY Protein kinase-like (PK-like) 95 409 IPR011009 -
Trre10g00742 420 MobiDBLite consensus disorder prediction 51 72 - -
Trre10g00742 420 ProSitePatterns Protein kinases ATP-binding region signature. 127 150 IPR017441 GO:0005524
Trre10g00742 420 CDD STKc_CK2_alpha 102 406 IPR045216 GO:0004674|GO:0006468
Trre10g00742 420 Gene3D Transferase(Phosphotransferase) domain 1 195 419 - -
Trre10g00742 420 SMART serkin_6 121 406 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g00742 420 Gene3D Phosphorylase Kinase; domain 1 107 194 - -
Trre10g00742 420 PANTHER CASEIN KINASE II SUBUNIT ALPHA 86 416 IPR045216 GO:0004674|GO:0006468
Trre10g00742 420 FunFam Casein kinase II subunit alpha 198 409 - -
Trre10g00742 420 ProSitePatterns Serine/Threonine protein kinases active-site signature. 234 246 IPR008271 GO:0004672|GO:0006468
Trre10g00742 420 FunFam Casein kinase II subunit alpha 107 197 - -
Trre10g00742 420 MobiDBLite consensus disorder prediction 58 72 - -
Trre10g00742 420 Pfam Protein kinase domain 121 406 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g00742 420 ProSiteProfiles Protein kinase domain profile. 121 406 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g00742 Trre-Chr10 5559992 5565117 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g00742 119 407 Core Cell Cycle Gene Families AT1G76540 30.547 1.71e-40 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CK2 Trre10g00742 Pkinase 4.6e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g00742 K03097 - cave:132186318 640.958