Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trre10g00736 | ATGGCTAACTTGGATGGCAATTCACTCCAGAATGCTAAGAAATCCATCCCGACTCCACCTCCTTCACCTCAATCAGCAGCAACCGGTTATCCTTGCGAGTATGTGGTGATGAATAATTTAGCACAAAGAGGGCGAAACAGCTGTGTTTCTTCAGCAACAAGAGATTTATGGGAGCGTCTTTTCAATGATGGTTATAAAGCCGACGTTTGCATTAATACTGATAATGGTGGCATTGTTTATGCTCATTCTAACATTATTGGAGTGGCGTCTCCTGTATTGAGAGGCATGCTGAAGCAAGCAAATCGTTTCAATCGGTGGCGAACAATCTCAATCTCTGGGGTTCCACATGATGCAGTACGAGTTTTTATTCGTTACTTGTACTCTTCCTGTTACGAGCAAGAAGAAATGAAGGAATTTGTCCTACAATTGTTGGTGCTTTCACATGTATACGTGGTCCCTCACTTGAAGCGTGAATGTGAACAGAAGCTAGAAATGGGGTTACTCACCATAGATAATGTAGTTGATGTATTTCAACTTGCATTATTGTGTGATGCTCCGCGGCTAAGTCTCATTTGTCACCGTATGATAATAAAAAACTTCAAAACTGTTTCGGAGTCGGAAGGATGGAAAGCAATGAAGCAGAGCCACCCAGTTCTAGAAAAGGAAGTTCTGGAATCAATGATTGAAGAAGAAAATAGTAAGAAGGAGAGGATCAGAAAAATGAATGAAAGACAGGTCTATCTGCAACTTTATGATGCAATGGAAGCTCTAGTTCACATATGTAGAGATGGTTGTCGAACTATTGGCCCGCACGATAAAGACTTTAAAGCAAACCAACCGTGTAGGTATTCATCCTGCAAAGGACTAGAATTGCTTGTTCGACATTTTGCCGGTTGCAAGTTGAGAGTCCCAGGAGGTTGTGGTCATTGCAAGAGGATGTGGCAACTGTTGGAGCTGCATTCTCGTCTGTGTGCTGATCCCAATGTCTGTAGAGTTCCTTTGTGCAGGAATTTTAAGCAGAGAATAGCAAAACAAAGCAAAAAAGATGAAATTAGATGGAAAATATTGGTTGAAAAGATCTTAACTACAAGAGGAATTGGGATTTCATCGTGCTTTCGGACACTATGA | 1128 | 0.4131 | MANLDGNSLQNAKKSIPTPPPSPQSAATGYPCEYVVMNNLAQRGRNSCVSSATRDLWERLFNDGYKADVCINTDNGGIVYAHSNIIGVASPVLRGMLKQANRFNRWRTISISGVPHDAVRVFIRYLYSSCYEQEEMKEFVLQLLVLSHVYVVPHLKRECEQKLEMGLLTIDNVVDVFQLALLCDAPRLSLICHRMIIKNFKTVSESEGWKAMKQSHPVLEKEVLESMIEEENSKKERIRKMNERQVYLQLYDAMEALVHICRDGCRTIGPHDKDFKANQPCRYSSCKGLELLVRHFAGCKLRVPGGCGHCKRMWQLLELHSRLCADPNVCRVPLCRNFKQRIAKQSKKDEIRWKILVEKILTTRGIGISSCFRTL | 375 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trre10g00736 | 375 | SUPERFAMILY | TAZ domain | 244 | 343 | IPR035898 | - | |
| Trre10g00736 | 375 | MobiDBLite | consensus disorder prediction | 1 | 15 | - | - | |
| Trre10g00736 | 375 | FunFam | BTB/POZ and TAZ domain-containing protein 2 | 169 | 239 | - | - | |
| Trre10g00736 | 375 | Gene3D | TAZ domain | 242 | 363 | IPR035898 | - | |
| Trre10g00736 | 375 | FunFam | BTB/POZ and TAZ domain-containing protein 3 | 46 | 166 | - | - | |
| Trre10g00736 | 375 | ProSiteProfiles | BTB domain profile. | 67 | 135 | IPR000210 | GO:0005515 | |
| Trre10g00736 | 375 | PANTHER | BTB/POZ AND TAZ DOMAIN-CONTAINING PROTEIN 3-RELATED | 39 | 369 | IPR044513 | - | |
| Trre10g00736 | 375 | Gene3D | Potassium Channel Kv1.1; Chain A | 38 | 167 | IPR011333 | - | |
| Trre10g00736 | 375 | ProSiteProfiles | Zinc finger TAZ-type profile. | 241 | 338 | IPR000197 | - | |
| Trre10g00736 | 375 | SMART | BTB_4 | 67 | 167 | IPR000210 | GO:0005515 | |
| Trre10g00736 | 375 | Pfam | TAZ zinc finger | 252 | 335 | IPR000197 | - | |
| Trre10g00736 | 375 | Gene3D | - | 168 | 241 | - | - | |
| Trre10g00736 | 375 | Coils | Coil | 221 | 244 | - | - | |
| Trre10g00736 | 375 | Pfam | BTB/POZ domain | 60 | 164 | IPR000210 | GO:0005515 | |
| Trre10g00736 | 375 | SMART | TAZ_2 | 244 | 336 | IPR000197 | - | |
| Trre10g00736 | 375 | SUPERFAMILY | POZ domain | 47 | 163 | IPR011333 | - | |
| Trre10g00736 | 375 | FunFam | BTB/POZ and TAZ domain-containing protein 2 | 241 | 365 | - | - | |
| Trre10g00736 | 375 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trre10g00736 | Trre-Chr10 | 5473047 | 5475815 | Dispersed/Wgd |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TR | TAZ | Trre10g00736 | BTB | 2.3e-10 | CL0033 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trre10g00736 | - | - | lja:Lj2g3v1968190.1 | 605.52 |