Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g00726 ATGGATACATTGTTTAGACTTGTAAGTTTTCAACACCAACACCAACCTGATCATCATCATCATCATCATCAATCTCTCAACTCCACAACAAGCATAACAACAACTTCTAGTAGCTCTAAATCATCAAAACAAAACTATCACCAAAATCACTACTACGAACAACAACAAGAAGAATGCTTCAACTTTTTCATGGATGAAGAAGATCTTTCCTCATCTTCTTCTAAGCACTACTATCCTTATAGTCAACCCTCCACCACAATTACTACTCACACCCCCACCCCTACACCTACACCACCACCTCCTTCAACCGATTTCACCTTCGAATTAACCGGTAAGTGGGCCCACAACATCCTCCTTGAAACAGCACATGCTATAGCTGAAAAGAATACCACTCGTTTACAACAACTTATGTGGATGCTTAATGAACTGAGCTCAGCTTACGGAGACACAGAACAAAAACTCGCGGCTTATTTTCTCCAAGCCTTATTTTCTCGAATGAACGAAGCTGGTACTCGAACCTTTCGAACACTAGCTTCGGCATCAGAGAAAACTTGCTCATTCGAATCAACACGAAAAACGGTTTTGAAATTCCAAGAAGTTAGTCCTTGGACTACTTTTGGTCATGTCGCGTGCAATGGCGCGATTTTAGAAGCGTTAGAAGGAGATTCTAGATTGCATATAATTGATATAAGTAACACTTATTGCACTCAATGGCCTACGCTTTTCGAAGCGTTGGCTACTCGCACTGACGATACTCCTCATCTCCGATTAACCACCGTTGTAACCGCTAGTGGCTCCGTTCAAAAAGTTATGAAAGAAATTGGTTCAAGATTGGAGAAATTTGCTAGACTCATGGGAGTTCCATTTAAATTCAATGTTATTCATCACGCCGGTGATCTTTCCGATTTAGATTTCTCCGATTTAGATATTAAAGAAGATGAAGCTTTAGCTATTAATTGTGTTAATACTTTGCATTCAATTACAATTGGTAATAGTAATGGTAACCGGCGCGACGCATTAATAACGAAGTTAATCGCGTTACGGCCAAGAATAGTGACGGTGGTGGAAGAGGAAGCTGATTTAGATTTTGGTTATGAAGGATATGAATTTGTGAGAGGTTTTGAAGAATGTTTAAGATGGTTTAGGGTTTATTTTGAAGCATTAGAAGAGAGTTTTACAAAGACAAGTAATGAGAGGTTGATGTTGGAAAGAGAAGCCGGAAGAGAGATAGTTGATTTGGTAGCGTGTGCTCCGGCGGAGTCGATGGAACGGAGAGAAACGGCGGTGAGATGGTGTCAACGTTTGCATGGTGGAGGGTTTAATACGGTGGCGTTTAGTGAAGAAGTTTGTGATGATGTTAGGGCTTTGTTGAGAAGGTATAAAGAAGGGTGGTCAATGACACGGTGTAATGATGCCGGAATATTCTTAACGTGGAAGGAACAACCGGTGGTTTGGGCCAGTGCATGGAGGCCTTGA 1476 0.4112 MDTLFRLVSFQHQHQPDHHHHHHQSLNSTTSITTTSSSSKSSKQNYHQNHYYEQQQEECFNFFMDEEDLSSSSSKHYYPYSQPSTTITTHTPTPTPTPPPPSTDFTFELTGKWAHNILLETAHAIAEKNTTRLQQLMWMLNELSSAYGDTEQKLAAYFLQALFSRMNEAGTRTFRTLASASEKTCSFESTRKTVLKFQEVSPWTTFGHVACNGAILEALEGDSRLHIIDISNTYCTQWPTLFEALATRTDDTPHLRLTTVVTASGSVQKVMKEIGSRLEKFARLMGVPFKFNVIHHAGDLSDLDFSDLDIKEDEALAINCVNTLHSITIGNSNGNRRDALITKLIALRPRIVTVVEEEADLDFGYEGYEFVRGFEECLRWFRVYFEALEESFTKTSNERLMLEREAGREIVDLVACAPAESMERRETAVRWCQRLHGGGFNTVAFSEEVCDDVRALLRRYKEGWSMTRCNDAGIFLTWKEQPVVWASAWRP 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g00726 491 MobiDBLite consensus disorder prediction 74 91 - -
Trre10g00726 491 ProSiteProfiles GRAS family profile. 105 490 IPR005202 -
Trre10g00726 491 MobiDBLite consensus disorder prediction 26 47 - -
Trre10g00726 491 MobiDBLite consensus disorder prediction 74 100 - -
Trre10g00726 491 MobiDBLite consensus disorder prediction 12 47 - -
Trre10g00726 491 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 69 480 IPR005202 -
Trre10g00726 491 Pfam GRAS domain family 116 490 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g00726 Trre-Chr10 5366965 5368440 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g00726 1 491 GRAS Transcription Factor Family AT4G37650 58.041 0.0 577
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Trre10g00726 GRAS 7.7e-106 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g00726 - - gmx:100820459 691.804