Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g00714 ATGAATATGGCTGGTGGTTTAATCAGTAATACTGTTGGGCTGCCAGCTAAAAGGGATATGGTTGTTGGGTTTGAGGGTGGTGGGGATGGTCAGATTCTAGATCTGGACACTGCTGTTAAAGATGGTGTCTTGGGTGGTGTTGACGGTGGTGTTGTGGGAACTGGTGTTGGTGAGAAATTAGATCTGAGAAAAATGATTCAAGAGCTTGATTTATGTGAAGTGCCTAGTGTTTTCATTTGTCCAATCTCTCTTGAACCAATGCAAGACCCTGTTACTCTTTGCACCGGACAAACCTATGAGAGGAACAATATTCTCAAATGGTTTAACCTAGGACACTTCACATGTCCCACAACTATGCAAGAGCTTTGGGATGATTCAATCACTCCAAACACAACACTTTATCGCCTTATATACACTTGGTTCTCTCAGACGTACTTGTTGATGAAGAAGAGGTCTGAAGATGTTCAAGGAAGAGCTTCTGAACTTGTGGAGACACTCAAGAAGGTGAAGGGTCAAGCTCGTGTTCATGCTTTGAAGGAACTTCATCATGTTGTGGCTGTTCATGCCACTGCTCGTAAGTCTGTGATTGATGGAGGTGGTGTTTCTGTTTTGTCTTCTTTACTTGGTCCTTTTACTTCACATGCTGTTGGCTCTGAAGTTATAGGTATTCTTGTTAGTTTGACACTTGATTCTGAATCCAAAAAGAATCTTATGCAACCTGCTAAGATTTCATTGATGGTTGACATCTTGAATGAGGGTTCAATTGAGACTAAAATCAATTGCACGCGGTTGATTGAATCGTTAATTGAGGAGAAGGATTTTCGTTCCGAGATTATCTCCAGCCATAGTCTTTTGGTTGGATTGATGAGGCTTGTTAAGGATAAGAGACACAGCAATGGAATCTGTCCTGGATTAAGCCTCCTCAGAACAGTGTGCTTCTATAAGGAAGTTAAGATTTTGTTAGTTAGCATTGGTGCTGTTTCTCAATTAGTTGAATTGTTGTCTGGTATGGAGCATGAATGTTTGGAATTAGCTCTTTGCGTTTTGGATTCGTTGTCGTCGATACCCGAAGGCAGAGTAGCTTTGAAGGAATGTGTTAGCACCATACCAATCATGGTGAGACTTTTGATGAGGATCTCAGAAAGCTGCACTCAGTATGCATTGTCGATTTTGTGGTCTGTTTGCAAGCTTGCGCCGGAGGAGTGTTCGTCAATTGCCGTCGATGCAGGTCTTGCTGCAAAGCTCCTTCTTGTGATTCAAAGTGGTTGCAATCCAATATTGAAACAACAAGCTGCCGAGCTTTTGAAACTATGTAGTTTGAATTATTCAGATACCATCTTCATTTCCAAGTGCAAGCTTACAAGAACAATCCAATGA 1377 0.4161 MNMAGGLISNTVGLPAKRDMVVGFEGGGDGQILDLDTAVKDGVLGGVDGGVVGTGVGEKLDLRKMIQELDLCEVPSVFICPISLEPMQDPVTLCTGQTYERNNILKWFNLGHFTCPTTMQELWDDSITPNTTLYRLIYTWFSQTYLLMKKRSEDVQGRASELVETLKKVKGQARVHALKELHHVVAVHATARKSVIDGGGVSVLSSLLGPFTSHAVGSEVIGILVSLTLDSESKKNLMQPAKISLMVDILNEGSIETKINCTRLIESLIEEKDFRSEIISSHSLLVGLMRLVKDKRHSNGICPGLSLLRTVCFYKEVKILLVSIGAVSQLVELLSGMEHECLELALCVLDSLSSIPEGRVALKECVSTIPIMVRLLMRISESCTQYALSILWSVCKLAPEECSSIAVDAGLAAKLLLVIQSGCNPILKQQAAELLKLCSLNYSDTIFISKCKLTRTIQ 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g00714 458 CDD RING-Ubox_PUB 75 125 IPR045210 -
Trre10g00714 458 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 73 145 IPR013083 -
Trre10g00714 458 ProSiteProfiles U-box domain profile. 73 147 IPR003613 GO:0004842|GO:0016567
Trre10g00714 458 SMART Ubox_2 77 140 IPR003613 GO:0004842|GO:0016567
Trre10g00714 458 SUPERFAMILY ARM repeat 162 443 IPR016024 -
Trre10g00714 458 Pfam U-box domain 74 143 IPR003613 GO:0004842|GO:0016567
Trre10g00714 458 SUPERFAMILY RING/U-box 69 143 - -
Trre10g00714 458 PANTHER WDSAM1 PROTEIN 69 444 IPR045185 GO:0061630
Trre10g00714 458 Gene3D - 146 453 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g00714 Trre-Chr10 5260061 5261957 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g00714 15 458 U-box Gene Family AT3G49810 73.874 0.0 656
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g00714 - - gmx:100779827 769.615