Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g00700 ATGAATATAGATGTTCCTTCCTTTGCTGCTGCTGCTACTGAAACAGTTCCAACAAGCTTTTATTATCACCCTACACCTCTTCATAACTATGGCTTTTACTATGGACTTGAAAGTGAACATGTTGGATTGTATTCACCCTTACCTATTATGCTTGATGGATCAACATATGGAATAGAAGCTCTTAGTAGATCACAATCACAAGCAATGGGAATCCCTCAATATGAATGCAATAGAAAAGAAGCACTACAAATGAACATGGATAGTATTTTTTACAACCAAACTTCATGGCATAATAAACCAAACAATCCAAATAATGTAAGTGATGTACAAGGGAATACGAGTCTGTTGGAGAGTCTGAGGGAGCATCAGGAGCAACAATTCTCGTATTACACCGTCTTAGGAAATCAAGATGTGATGTTAGAAGGGTCGATGAAAAATGAACTAAAAGATAGTGTCCAACTCCCAAATATAGTTGAAGATGAAGTTTATGATCTTAAGAGATGGATCTCAAGGGACATTCATGCTACTAGCCATGCACAAGAGTTAAAATATGGGTTGTCTATGAGTCCTAGCTCACAATCAAGTTATGTTACAAGTTCACAACAAACATCAACTATTGATTCTGTTTCCATTGATAGAATGAAAATGAAGCCTGAAATAGTGAACTTGAAAAAGAATCAGAATCAAACCTTTGGGCAAAGAACATCTCAATATAGAGGTGTAACAAGACATAGGTGGACTGGTAGATATGAAGCTCATCTATGGGACAACAGCTGTAAGAAAGAAGGACAAGCTAGGAAAGGAAAGCAAGTTTATCTAGGAGGTTATGACATGGAAGAAAAAGCTGCAAGAGCTTATGATATGGCTGCACTCAAGTATTGGGGACCCTCCACACGTATAAATTTTCCATTGGAAAATTATCAAAAGGAGCTTGAAGAAATGAAGAAAATGACTAGACAAGAATATGTTGCTCATTTAAGAAGGAAAAGCAGTGGATTCTCAAGAGGAGCTTCAATGTATAGAGGAGTAACAAGACATCATCAACATGGAAGGTGGCAAGCTCGAATAGGGAGAGTTGCTGGAAATAAAGATCTCTATCTTGGAACATTCACTACACAAGAAGAAGCAGGTGAAGCCTATGACATAGCTGCTATAAAATTTAGAGGAGCAAATGCTGTTACAAATTTTGATATAACAAAATATGATGTGGAAAAAATTATAGCAAGCAATAATCTTCTTAACAGTGAAGAAGCTAAGAGAAACACAAAAATGGATGAAGTAATTAACATTGAAGAAGCCATTAATCCAATGCAGAAGAAGTGCAAAATTCAATCATTCTCAATAGGTTTAGATGAAATATATAATCAAGAAATAGATGAATATTCAAATAGAGTGTTACATATATCAAATCCTTCTTCAATTGTGACAAGTTTGAGTAGCTCAAGAGAACAAAGCCCTGAAAACAAAACAAGCTTACCAATGCTCTTTGGAATGAGTTCAACAGAATCAATGTCTTCATTTTCTTTGCCTCAAATGCCACTGTCTTTTTTTGCTGCTTGGAATGATGCAGCATAG 1575 0.3587 MNIDVPSFAAAATETVPTSFYYHPTPLHNYGFYYGLESEHVGLYSPLPIMLDGSTYGIEALSRSQSQAMGIPQYECNRKEALQMNMDSIFYNQTSWHNKPNNPNNVSDVQGNTSLLESLREHQEQQFSYYTVLGNQDVMLEGSMKNELKDSVQLPNIVEDEVYDLKRWISRDIHATSHAQELKYGLSMSPSSQSSYVTSSQQTSTIDSVSIDRMKMKPEIVNLKKNQNQTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQARKGKQVYLGGYDMEEKAARAYDMAALKYWGPSTRINFPLENYQKELEEMKKMTRQEYVAHLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFTTQEEAGEAYDIAAIKFRGANAVTNFDITKYDVEKIIASNNLLNSEEAKRNTKMDEVINIEEAINPMQKKCKIQSFSIGLDEIYNQEIDEYSNRVLHISNPSSIVTSLSSSREQSPENKTSLPMLFGMSSTESMSSFSLPQMPLSFFAAWNDAA 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g00700 524 Gene3D AP2/ERF domain 236 305 IPR036955 GO:0003700|GO:0006355
Trre10g00700 524 Gene3D AP2/ERF domain 339 399 IPR036955 GO:0003700|GO:0006355
Trre10g00700 524 PRINTS Ethylene responsive element binding protein signature 238 249 IPR001471 GO:0003700|GO:0006355
Trre10g00700 524 PRINTS Ethylene responsive element binding protein signature 379 399 IPR001471 GO:0003700|GO:0006355
Trre10g00700 524 ProSiteProfiles AP2/ERF domain profile. 339 397 IPR001471 GO:0003700|GO:0006355
Trre10g00700 524 ProSiteProfiles AP2/ERF domain profile. 237 303 IPR001471 GO:0003700|GO:0006355
Trre10g00700 524 Pfam AP2 domain 237 295 IPR001471 GO:0003700|GO:0006355
Trre10g00700 524 Pfam AP2 domain 340 389 IPR001471 GO:0003700|GO:0006355
Trre10g00700 524 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 176 427 - -
Trre10g00700 524 FunFam AP2-like ethylene-responsive transcription factor 338 399 - -
Trre10g00700 524 SUPERFAMILY DNA-binding domain 236 305 IPR016177 GO:0003677
Trre10g00700 524 FunFam AP2-like ethylene-responsive transcription factor ANT 236 305 - -
Trre10g00700 524 CDD AP2 236 303 IPR001471 GO:0003700|GO:0006355
Trre10g00700 524 SUPERFAMILY DNA-binding domain 338 398 IPR016177 GO:0003677
Trre10g00700 524 SMART rav1_2 237 309 IPR001471 GO:0003700|GO:0006355
Trre10g00700 524 SMART rav1_2 339 403 IPR001471 GO:0003700|GO:0006355
Trre10g00700 524 CDD AP2 338 399 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g00700 Trre-Chr10 5167095 5170360 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g00700 29 523 AP2-EREBP Transcription Factor Family AT4G37750 43.234 5.12e-130 388
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Trre10g00700 AP2 3.6e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g00700 K09285 - gmx:100812275 554.288