Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g00699 ATGAAGTCCTTTGAAAATATTTATGATACCATTAACTTAAAAAATCAAAATAGTAACATGTTAGGTTTCTCTGTCTCTCCTCAAATGAATATAGATGTTCCTTCCTTTGCTGCTGCTGCTACTGAAACAGTTCCAACAAGCTTTTATTATCACCCTACACCTCTTCATAACTATGGCTTTTACTATGGACTTGAAAGTGAACATGTTGGATTGTATTCACCCTTACCTATTATGCTTGATGGATCAACATATGGAATAGAAGCTCTTAGTAGATCACAATCACAAGCAATGGGAATCCCTCAATATGAATGCAATAGAAAAGAAGCACTACAAATGAACATGGATAGTATTTTTTACAACCAAACTTCATGGCATAATAAACCAAACAATCCAAATAATGTAAGTGATGTACAAGGGAATACGAGTCTGTTGGAGAGTCTGAGGGAGCATCAGGAGCAACAATTCTCGTATTACACCGTCTTAGGAAATCAAGATGTGATGTTAGAAGGGTCGATGAAAAATGAACTAAAAGATAGTGTCCAACTCCCAAATATAGTTGAAGATGAAGTTTATGATCTTAAGAGATGGATCTCAAGGGACATTCATGCTACTAGCCATGCACAAGAGTTAAAATATGGGTTGTCTATGAGTCCTAGCTCACAATCAAGTTATGTTACAAGTTCACAACAAACATCAACTATTGATTCTGTTTCCATTGATAGAATGAAAATGAAGCCTGAAATAGTGAACTTGAAAAAGAATCAGAATCAAACCTTTGGGCAAAGAACATCTCAATATAGAGGTGTAACAAGACATAGGTGGACTGGTAGATATGAAGCTCATCTATGGGACAACAGCTGTAAGAAAGAAGGACAAGCTAGGAAAGGAAAGCAAGGAGGTTATGACATGGAAGAAAAAGCTGCAAGAGCTTATGATATGGCTGCACTCAAGTATTGGGGACCCTCCACACGTATAAATTTTCCATTGGAAAATTATCAAAAGGAGCTTGAAGAAATGAAGAAAATGACTAGACAAGAATATGTTGCTCATTTAAGAAGGAAAAGCAGTGGATTCTCAAGAGGAGCTTCAATGTATAGAGGAGTAACAAGCAGACATCATCAACATGGAAGGTGGCAAGCTCGAATAGGGAGAGTTGCTGGAAATAAAGATCTCTATCTTGGAACATTCACTACACAAGAAGAAGCAGGTGAAGCCTATGACATAGCTGCTATAAAATTTAGAGGAGCAAATGCTGTTACAAATTTTGATATAACAAAATATGATGTGGAAAAAATTATAGCAAGCAATAATCTTCTTAACAGTGAAGAAGCTAAGAGAAACACAAAAATGGATGAAGTAATTAACATTGAAGAAGCCATTAATCCAATGCAGAAGAAGTGCAAAATTCAATCATTCTCAATAGGTTTAGATGAAATATATAATCAAGAAATAGATGAATATTCAAATAGAGTGTTACATATATCAAATCCTTCTTCAATTGTGACAAGTTTGAGTAGCTCAAGAGAACAAAGCCCTGAAAACAAAACAAGCTTACCAATGCTCTTTGGAATGAGTTCAACAGAATCAATGTCTTCATTTTCTTTGCCTCAAATGCCACTGTCTTTTTTTGCTGCTTGGAATGATGCAGCATAG 1653 0.3557 MKSFENIYDTINLKNQNSNMLGFSVSPQMNIDVPSFAAAATETVPTSFYYHPTPLHNYGFYYGLESEHVGLYSPLPIMLDGSTYGIEALSRSQSQAMGIPQYECNRKEALQMNMDSIFYNQTSWHNKPNNPNNVSDVQGNTSLLESLREHQEQQFSYYTVLGNQDVMLEGSMKNELKDSVQLPNIVEDEVYDLKRWISRDIHATSHAQELKYGLSMSPSSQSSYVTSSQQTSTIDSVSIDRMKMKPEIVNLKKNQNQTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQARKGKQGGYDMEEKAARAYDMAALKYWGPSTRINFPLENYQKELEEMKKMTRQEYVAHLRRKSSGFSRGASMYRGVTSRHHQHGRWQARIGRVAGNKDLYLGTFTTQEEAGEAYDIAAIKFRGANAVTNFDITKYDVEKIIASNNLLNSEEAKRNTKMDEVINIEEAINPMQKKCKIQSFSIGLDEIYNQEIDEYSNRVLHISNPSSIVTSLSSSREQSPENKTSLPMLFGMSSTESMSSFSLPQMPLSFFAAWNDAA 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g00699 550 Gene3D AP2/ERF domain 264 330 IPR036955 GO:0003700|GO:0006355
Trre10g00699 550 Gene3D AP2/ERF domain 364 425 IPR036955 GO:0003700|GO:0006355
Trre10g00699 550 CDD AP2 363 425 IPR001471 GO:0003700|GO:0006355
Trre10g00699 550 FunFam AP2-like ethylene-responsive transcription factor 363 425 - -
Trre10g00699 550 PRINTS Ethylene responsive element binding protein signature 266 277 IPR001471 GO:0003700|GO:0006355
Trre10g00699 550 PRINTS Ethylene responsive element binding protein signature 405 425 IPR001471 GO:0003700|GO:0006355
Trre10g00699 550 SUPERFAMILY DNA-binding domain 264 330 IPR016177 GO:0003677
Trre10g00699 550 ProSiteProfiles AP2/ERF domain profile. 364 423 IPR001471 GO:0003700|GO:0006355
Trre10g00699 550 Pfam AP2 domain 265 320 IPR001471 GO:0003700|GO:0006355
Trre10g00699 550 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 204 453 - -
Trre10g00699 550 FunFam AP2-like ethylene-responsive transcription factor ANT 264 330 - -
Trre10g00699 550 CDD AP2 264 328 IPR001471 GO:0003700|GO:0006355
Trre10g00699 550 ProSiteProfiles AP2/ERF domain profile. 265 328 IPR001471 GO:0003700|GO:0006355
Trre10g00699 550 SMART rav1_2 364 429 IPR001471 GO:0003700|GO:0006355
Trre10g00699 550 SMART rav1_2 265 334 IPR001471 GO:0003700|GO:0006355
Trre10g00699 550 SUPERFAMILY DNA-binding domain 363 424 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g00699 Trre-Chr10 5167095 5170444 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g00699 57 549 AP2-EREBP Transcription Factor Family AT4G37750 42.632 3.30e-123 371
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Trre10g00699 AP2 1.8e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g00699 K09285 - gmx:100792451 570.466